Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5537 203 4e-47 seq14115 84.2 3e-11 seq11236 84.2 3e-11 >seq5537 Length=6528 Score = 203 bits (224), Expect = 4e-47 Identities = 1107/1741 (64%), Gaps = 58/1741 (3%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTT-- 109471 |||||||| ||||| ||||| ||| | ||| || | | ||||| || | || | Sbjct 5854 TAATACATGCCCGTCTTGAGGCCACGTTCCCAGGCAAAAAAGTGCATAGATGTCAGCTGG 5795 Query 109472 -TGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGA 109530 ||||| || ||| | |||| ||||| |||| ||| ||| || ||||| Sbjct 5794 CTGGAA---GTTGGATTTTCCAAAAACAGATTCAAGCTTTGACTCTGGTCAATGAACTTG 5738 Query 109531 CCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTAC 109590 ||||| || | ||||| || || | | ||| || | ||||||||| ||| ||| Sbjct 5737 CCACGGTCCACAGCCATCTCAATAAGATCCTTCTGCCGAATTTCCCACACAACACGATAC 5678 Query 109591 AAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC--AGCCTTCA 109648 || | ||||| |||| |||||| || |||||||| | |||||| || | | Sbjct 5677 AACTCCTTGAGGTCATTTGGAATGCCCTTAATGTTTTGTACCGAGCCATTGTAGGCAATA 5618 Query 109649 CCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGAT 109708 || | | | |||||||| ||| ||||| ||| | ||||| ||||| | Sbjct 5617 ATCTG-GTTGCG-CATCTCTTCGTTCCACAGACCCCGCTTAATAAGATCCATCACAAGGT 5560 Query 109709 GCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGT 109768 |||||| ||||| ||| |||||| || || || | |||||| || | || Sbjct 5559 ACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAA 5500 Query 109769 AGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAG 109828 | ||||| || ||||||||||| || || || || | |||||| || |||||||| |||| Sbjct 5499 ATGGTTCAAAGCACTCATTGTTCCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 5440 Query 109829 CCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACG-CATTGCGTCCCAA 109887 ||| || | || || | ||| | || | || || || | || |||||||||| Sbjct 5439 CCAATAGTAACGAATTCCGCATACCACTTTTCATGACACG-TCTCTTCAATGCGTCCCAA 5381 Query 109888 TCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCA 109947 || |||| ||||| | || || | ||||||| ||| ||| ||| || | Sbjct 5380 TCCCAACGGCCACTTCGTG--GTTTCTGC-TCCCACAGATCAAATTGTAGTTGGCCTTGC 5324 Query 109948 GCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAA 110007 | || ||| || || | | | || | ||| || || || || | || Sbjct 5323 GATGCGGGACTGCCTGCAAACCGCGCATAAGGCCCTTCCACTTCCGCGAGTTCCACGCTT 5264 Query 110008 GCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCT 110067 ||||| | || | | || || || |||||||||| |||||| | | ||| Sbjct 5263 GCCTCCACGGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTTCTTGCCTCC 5204 Query 110068 TCACAGTCGAAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAG 110126 | || || || || || || || |||||| ||||| | || || || || | Sbjct 5203 TGGCATGTAAATGGTAG-CCGCATCAGGATAAACGTGTCCGCCATTCCTTGTACGCCAAT 5145 Query 110127 ACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC---TACGGGGTAAAAGTT 110183 |||||||| |||| | ||| || ||| | || ||| || ||| ||| Sbjct 5144 TCCAATGGGACGATTAAGCTCGTT---GCTTCGGCGTGACTCGGGTACAGGATAATGGTT 5088 Query 110184 GCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTC 110243 || || || || ||||| ||||| || || ||| ||||||||| |||| || | Sbjct 5087 ACGATCAATCACTCGATTAAGATTTTTTGTGACAATCTTCGTGACCTCATACAGCCGCTG 5028 Query 110244 GTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATT 110303 || ||| || || | ||||||||| ||| | || || ||||| || || || || Sbjct 5027 GTGATCATACATTCTTTTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCGAGGTT 4968 Query 110304 GCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACT 110363 |||||| | | ||| || || || || || | ||| ||||| || | ||| || | Sbjct 4967 GCACACCGCAACCTCATCCTTTGATGTATACTCTATAATCTCCGTGCAAAGGTTCGAGCA 4908 Query 110364 CTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCAT 110423 ||| ||||| || | ||||||||||| ||||| ||| ||||||||||| || ||||| Sbjct 4907 CTTGATGACTCCAATATTCTTCTGATTTGATTTACGGTTACATGCATCCTTGTAAAGCAT 4848 Query 110424 GTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA--CATCGGCGGCG 110481 | | ||| || |||||| |||| || | ||| || || ||| | || | || Sbjct 4847 GAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATAGCAAACCACAGGGATTG--AGCT 4790 Query 110482 GGGACAGTTGCGTTA--GCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATT 110539 | ||||| | | | | || |||| |||||| ||| || | || ||| | Sbjct 4789 TGCACAGT--CTTCACGCCTCGATTTTCCCTTTCGTACCCCTCGTATAACTTCTTAAAAT 4732 Query 110540 CCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGT-CGGGACAGAAGAGGGACCAATTT 110598 | | ||||| ||| || || |||| | | |||| | | | | ||| ||| Sbjct 4731 CATCACCGTAGCAGTCACTCAGTCCTGGCGCCGTATGCGGGTC-CATCAACGTCCACTTT 4673 Query 110599 CCACC-CTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGA--AAAGG 110655 || || ||| || || | || |||||| |||||||||||||| | || | | ||| Sbjct 4672 CCTCCGCTCTTC-ACACGCTCCATGAAGAGGTCAGGAATCCAAAGAGCGTAAAACAAATC 4614 Query 110656 TCACGGCAACGAGCCTCTTCATCACC------TTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 || || | | | ||||| | ||| || || | | || ||| | Sbjct 4613 TCGCGCCCTCTGG--TCTTCCTTACCGGTATTTTTCTTCAAAAGAAG------AAAATTA 4562 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCC 110766 | |||||| ||||| || || | |||| || | || || ||||| | ||| Sbjct 4561 AAGATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGTTTGCCACCG 4502 Query 110767 GCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCG 110826 | |||| ||||||||||| ||| ||| | || | ||||| || | || ||| | Sbjct 4501 CCTTGGTCTACATAGCGTGCCGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTT 4442 Query 110827 GATTGACCATTTGTACCCCTAATTCTGGACTTATTG-GCA-CGAATGTCGTGGATATGCA 110884 || || |||||||| || ||| | ||| | || || || | ||| | ||| | Sbjct 4441 GACTGGCCATTTGTCCCAGCAATGTAG--CTTCCAGAACAGCGGATATTGTGCACATGAA 4384 Query 110885 TACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATAC 110944 ||||||||||| || | ||||| || ||||| | | | |||| ||||||| | Sbjct 4383 CGCCAATACCACCAGCGGATTTACTTATAACGGCACATTGCTTCAATGTATCATAAATCC 4324 Query 110945 CATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCG 111004 | ||||| || | |||||| ||||| |||||| ||| |||||| ||||| Sbjct 4323 CCTCAATACTGTCCTCACGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGCG 4264 Query 111005 TTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGT 111064 |||| || ||||| | ||| ||||| ||||| | || || | ||||| | || | Sbjct 4263 TTCCGGCGTTGAATAATGTCGGTGTGGCATGTGTAAAGTCCCCAAGTGACATATGGTCAT 4204 Query 111065 ATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACA 111124 |||| || | || | ||| | |||||||||||||| || || |||| |||| Sbjct 4203 ATGTCTCCTTTACGCGTTCCATATCCTCACCGTGAATACCAAGAGCGACGCGCAAAAACA 4144 Query 111125 T 111125 | Sbjct 4143 T 4143 >seq14115 Length=1216 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 876 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 935 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 936 CTGTTGGGAGCA-CTTTT 952 >seq11236 Length=2408 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 1875 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 1816 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 1815 CTGTTGGGAGCA-CTTTT 1799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588805535621200