Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5537 176 5e-39 seq19605 86.0 7e-12 >seq5537 Length=6528 Score = 176 bits (194), Expect = 5e-39 Identities = 693/1070 (65%), Gaps = 35/1070 (3%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCT-- 105653 || ||||| || |||||||| || ||| ||| || | | |||||||| | |||| Sbjct 5854 TAATACATGCCCGTCTTGAGGCCACGTTCCCAGGCAAAAAAGTGCATAGATGTCAGCTGG 5795 Query 105654 -TGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGA 105712 |||| |||||| |||||| || ||||||| |||||||||||||||||||| Sbjct 5794 CTGGAA---GTTGGATTTTCCAAAAACAGATTCAAGCTTTGACTCTGGTCAATGAACTTG 5738 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 ||||| | | ||||| ||||| | ||||||| | ||||||||||| || || Sbjct 5737 CCACGGTCCACAGCCATCTCAATAAGATCCTTCTGCCGAATTTCCCACACAACACGATAC 5678 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACC 105832 | | ||||| |||| ||| || | || ||||| | || || | | | Sbjct 5677 AACTCCTTGAGGTCATTTGGAATGCCCTTAATGTTTTGTACCGAGCCATTG---TAGGCA 5621 Query 105833 ATGAGATCCTT---CATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 || | | || ||| || | | ||| ||||| ||| | ||||| | || || Sbjct 5620 ATAATCTGGTTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATAAGATCCATCACAAGG 5561 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 | |||||| || | |||||| || || || | || ||||| || | || Sbjct 5560 TACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTA 5501 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGGAGGCTGTTGGCATTGG 106008 | ||||||||||| ||||| || |||||| || || | ||||| || || |||||||| Sbjct 5500 AATGGTTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGG 5442 Query 106009 TGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066 |||| | || || | | || | ||| ||| | ||| ||| ||| | | ||| Sbjct 5441 AGCCAATAGTAACGAAT--TCCGCATACCACTTTTCATGACACGTCTCTTCAATGCGTCC 5384 Query 106067 CAGTCGTAGTTGAG----CTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122 || || | | | ||||||| || |||||| ||||||||| || ||||| Sbjct 5383 CAATCCCAACGGCCACTTCGTGGTTTCTGCT-CCCACAGATCAAATTGTAGTTGGCCTTG 5325 Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 106182 || | |||| || |||| | |||| | |||| |||| || | ||| ||| Sbjct 5324 CGATGCGGGACTGCCTGCAAACCGCGCATAAGGCCCTTCCACTTCCGCGAGTTCCACGCT 5265 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC-TCCTTGGCTT 106241 ||||||| || ||| || || |||||||| ||| |||||| | |||| || Sbjct 5264 TGCCTCCACGGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTTCTTGCCTC 5205 Query 106242 CATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCC 106300 | | | ||||| ||||| ||| || ||||| ||||| | ||||| || || Sbjct 5204 C-TGGCATGTAAATG-GTAGCCGCATCAGGATAAACGTGTCCGCCATTCCTTGTACGCCA 5147 Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAA 106357 | ||||| || | | || || ||| ||| | ||| || |||||| Sbjct 5146 ATTCCAATGGGACGATTAAGCTCGTTG--CTTCGGCGT-GACTCGGGTACAGGATAATGG 5090 Query 106358 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTT 106417 || | ||||| ||||| || |||||||| || |||||||| |||| |||| || Sbjct 5089 TTACGATCAATCACTCGATTAAGATTTTTTGTGACAATCTTCGTGACCTCATACAGCCGC 5030 Query 106418 TCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAA 106477 | | |||| | | | |||| | || ||| | |||||| || || || || | Sbjct 5029 TGGTGATCATACATTCTTTTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCGAGG 4970 Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 ||||| || || ||||||||| ||| ||||||| ||| || || || | ||| || Sbjct 4969 TTGCACACCGCAACCTCATCCTTTGATGTATACTCTATAATCTCCGTGCAAAGGTTCGAG 4910 Query 106538 CTCTTAATCGTCCCCAA-ATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAG 106596 | ||| || | | |||| |||||| || || || ||| || ||||||||||| || Sbjct 4909 CACTTGAT-GACTCCAATATTCTTCTGATTTGATTTACGGTTACATGCATCCTTGTAAAG 4851 Query 106597 CATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 |||| | || ||||| ||| |||| || | ||| || || ||||| Sbjct 4850 CATGAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATAGCAAACCACA 4801 >seq19605 Length=5274 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 1003 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 1062 Query 136226 GGTAGGA 136232 ||||||| Sbjct 1063 GGTAGGA 1069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589810044806960