Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5537 102 9e-17 >seq5537 Length=6528 Score = 102 bits (112), Expect = 9e-17 Identities = 272/416 (65%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 48222 TCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTC 48281 || || ||||||||||| ||| ||||| | | || | ||||| || || |||| Sbjct 4642 TCAGGAATCCAAAGAGCGTAAAACAAATCTCGCGCCCTCTGGTCTTCCTTACCGGTATTT 4583 Query 48282 CTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 | || | |||||| | | |||||| ||||||| || ||||| || || || | Sbjct 4582 TTCTTCAAAAGAAGAAAATTAAAGATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAG 4523 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 | ||| ||||| ||| ||||| |||| ||| | || || || || |||| | | Sbjct 4522 GCGCCTTTACGTTTGCCACCGCCTTGGTCTACATAGCGTGCCGTGTTATTCCAAACACGT 4463 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 | ||| || |||| || ||||| ||||| || || | ||| || |||||| | Sbjct 4462 AGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTTCCAGAACAG 4403 Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 | ||||| | || || |||||||| || |||| ||| | ||||| | Sbjct 4402 CGGATATTGTGCACATGAACGCCAATACCACCAGCGGATTTACTTATAACGGCACATTGC 4343 Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || | ||||||||||| || || ||||| || || ||| | ||||||||| | Sbjct 4342 TTCAATGTATCATAAATCCCCTCAATACTGTCCTCACGCATGGCAACAAGAAAACAAGAA 4283 Query 48582 GACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAA 48637 |||||| ||| | ||||| | || |||||||| || | ||||| |||| Sbjct 4282 CTCATTTGAGGAAAAGGCGTTCCGGCGTTGAATAATGTCGGTGTGGCATGTGTAAA 4227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561946111660560