Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1649 111 1e-19 >seq1649 Length=2817 Score = 111 bits (122), Expect = 1e-19 Identities = 376/575 (65%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 29806 GGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGT 29865 || || ||||||| ||| ||||||||||| || || ||||| || ||||||||||| Sbjct 2325 GGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGAGTGTGCACCAACTCTCCCGGC 2266 Query 29866 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29925 ||||| || | | || || | || | ||| | |||| ||| ||||| || Sbjct 2265 CGCAGCCCCGTCGCCTTTGCGATGAGAATGGTCAAGAGGGCGTAGGAGGCAATGTTGAAC 2206 Query 29926 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCG 29985 || || || || |||||||| | || | |||||| | | ||||| || || || | | Sbjct 2205 GGGACGCCAAGGCCCATGTCACATGAGCGCTGGTACAACATGCACGACAGTTCCCCATTG 2146 Query 29986 CTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30045 |||||||| ||||| | ||||||||| || || ||||| | ||| | | Sbjct 2145 CTCACGTAGAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCTT 2086 Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC- 30104 || ||||| || | || || || | || || || || || ||| || || Sbjct 2085 GGATTCCATGCCGTGAAGAGCATCCGGCGATCGTCAGGATTTGTCTTGAGCGTTTCAACA 2026 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTACT 30163 || ||| | |||||||||||| || |||| || | |||| || ||||| | Sbjct 2025 ATTGTCTTG-ATTTGATCCACCCCCTGTCCGTCATAGT-TGGCATCATGGTGTGTGTAGT 1968 Query 30164 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223 | || || || || | |||||| || ||||| || || || ||| ||| || ||| || Sbjct 1967 CGGCGCCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGG--TCCATC-TCCTCGT 1911 Query 30224 GCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30280 ||| || ||| | |||| | ||| | | ||| |||||| ||||||| || | | Sbjct 1910 ACTCCGTGAGGCCACGACTGTCAAGAAACGCACGGGAGCCGTTGTCGTCCCATATGTGGA 1851 Query 30281 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 30340 | ||||| || | || |||| | ||| || | | |||||||| || |||| Sbjct 1850 CGCCCTTGTCACTTAACTTCTTGGCATATGTTTCACCCCGTAGAAACCACAGTAGTTCCT 1791 Query 30341 C-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30374 | ||| || | |||||| |||| ||| || || Sbjct 1790 CGCAC-ACACCACGCCAAAAAACCCGCTTTGTTGT 1757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408502292454842