Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11292 109 1e-18 >seq11292 Length=3062 Score = 109 bits (120), Expect = 1e-18 Identities = 567/884 (64%), Gaps = 31/884 (4%) Strand=Plus/Minus Query 25453 ATCTTGCAGGTAACACACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAAC 25512 ||||| | | | | | || | ||||| ||| ||| ||||||| |||| ||| | | | Sbjct 1648 ATCTTTCCGATTAAATACCACGATATCTGGAAGAAGTACAAGGAGGCCGAAAGCAGCATC 1589 Query 25513 TGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAA 25572 ||||| | || || || || || || ||| ||| | |||| | | | | Sbjct 1588 TGGACGGTGGAGGAAATCGACTTGAGCAGTGACTTGGCGGACTGGGAAAAGATGAGCGAG 1529 Query 25573 GACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTG 25632 | ||| | |||| ||||| ||||| |||| |||||||| || |||||| || ||| Sbjct 1528 GGGGAGAGGTTTTTTATCAAGCACGTGCTGGCGTTCTTTGCTGCAAGTGATGGAATTGTG 1469 Query 25633 AACGAGAATCTGTGCG-AGAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTT 25690 ||||| ||| ||| || | |||| | |||||| || |||| ||||| || | Sbjct 1468 CTGGAGAACCTG-GCGCAGCGGTTCATGACGGAAGTACAAGTACC-GGAGGTGCGTTGCT 1411 Query 25691 TCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA 25750 ||||||| |||||||| ||||| || || || || || || || | ||| || Sbjct 1410 TCTACGGGTTCCAGATTGCCATTGAGAACGTACATTCGGAAACATACTCGGTGCTGTTGG 1351 Query 25751 TGACGTACATTACAGA--CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCG-AGCACA 25807 | ||||||||| || || || |||| || || || | ||||| | || | Sbjct 1350 ACATGTACATTACGGATCCGACG--GAGAAGGACCGTATGCTGCACGCCATTTCAACA-A 1294 Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTA 25867 | || |||| ||| ||||| ||||| || ||||||| |||| ||| | Sbjct 1293 TTCCATGCATTCAGAAAAAGGCCAACTGGGCGATTCGGTGGATCCGCAGC---AGCAGTT 1237 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 |||||| ||| || || || |||||||| || ||||| || || || || ||| || | Sbjct 1236 CGTTTGCCGAACGTCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCT 1177 Query 25928 T-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCC-A 25984 | |||| | | || ||||| ||| | | |||| | |||||||||||| ||||| | Sbjct 1176 TCTGCGCGC-TGTTTTGGCTGAAGAA-ACGGGGCCTGATGCCCGGGCTG-ACTTTCAGTA 1120 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGG 26044 | || ||||| | ||||| || | |||| || ||||| |||||| | ||| Sbjct 1119 ATGAACTCATTTCGCGTGACGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTACGAAA 1060 Query 26045 GCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAG-AG-GCTGT 26102 | || | | |||| | | ||| || ||| | | || | | || || || Sbjct 1059 ACTACATTGTGAACAAGC--TACCAAAGGAGCGTATTCGCGATATTATTTGCAGTGCGGT 1002 Query 26103 GGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAA 26162 ||| || ||| ||||| |||| |||||| Sbjct 1001 GGATATTGAGCGTGAGTTCATCTGTGACGCCATCCCTGTGCGGTTGCTGGGGATGAACG- 943 Query 26163 CAGACTCATGA-GCCAA--TACATTGAGTATGTGGCCGACCATCTGCTGT-GCCAGCTGG 26218 | ||| ||| | ||| ||||| |||| |||||| |||| ||| ||| | || ||| Sbjct 942 CGGACC--TGATGTCAACGTACATCGAGTTTGTGGCAGACCGACTGTTGTTGGCACTTGG 885 Query 26219 GACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGG 26278 | | | | | ||||| | ||||| |||||||||||||||| || || ||| Sbjct 884 CAATGAGC-GTCACTACAACTCAAAGAACCCATTCGACTTTATGGAAATGATCTCATTGC 826 Query 26279 AAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 | || ||||| |||||||||||||||| |||||| || |||||| Sbjct 825 AGGGAAAGACAAACTTCTTTGAAAAGAAGGTCGGTGAATATCAA 782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928575969093760