Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5537 125 4e-24 >seq5537 Length=6528 Score = 125 bits (138), Expect = 4e-24 Identities = 286/428 (67%), Gaps = 2/428 (0%) Strand=Plus/Minus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 |||||| || | || |||||||| | || ||||| ||||||| ||| ||| ||||| Sbjct 4655 CTCCATGAAGAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGCGCCCTCTGGTCTTC 4596 Query 25990 TTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 || ||| ||| || || | | | |||| ||| ||||| ||||| || ||||| Sbjct 4595 CTTACCGGTATTTTTCTTCAAAAGAAGAAAATTAAAGATATCACCATGCCAAGGCTCTAA 4536 Query 26050 ATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 ||||| ||||| ||||| | ||| || || ||||| ||||| || | ||| || | Sbjct 4535 GTAGATGGCAAAGGCGCCTTTACGTTTGCCACCGCCTTGGTCTACATAGCGTGCCGTGTT 4476 Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTT 26169 ||| |||| | ||| || || | ||| |||| || ||||| | | ||| | Sbjct 4475 ATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTA 4416 Query 26170 GGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT 26229 | ||| | | | |||| ||| |||||| || || |||||||| |||| || Sbjct 4415 GCTTCCAGAACAGCGGATATTGTGCACATGAACGCCAATACCACCAGCGGATTTACTTAT 4356 Query 26230 AGCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTA 26288 | | ||||| | || || |||||| |||| || | || || || | ||| | | Sbjct 4355 AACGGCACATTGCTTCAA-TGTATCATAAATCCCCTCAATACTGTCCTCACGCATGGCAA 4297 Query 26289 ATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAG 26348 | |||||||||| | ||| | | || ||||| | || |||||||||||||| | Sbjct 4296 CAAGAAAACAAGAACTCATTTGAGGAAAAGGCGTTCCGGCGTTGAATAATGTCGGTGTGG 4237 Query 26349 CATGAGTA 26356 |||| ||| Sbjct 4236 CATGTGTA 4229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252968594800550