Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5537 206 3e-48 >seq5537 Length=6528 Score = 206 bits (228), Expect = 3e-48 Identities = 694/1063 (65%), Gaps = 37/1063 (3%) Strand=Plus/Plus Query 75884 GCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGT 75943 ||||| ||| |||| |||| ||| || || || | ||||||||||||||||| ||| Sbjct 4809 GCTATACTCGAATCGCAGATGGAAACGGGCGTCCCTTTCATGCTTTACAAGGATGCATGT 4868 Query 75944 AACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAA 76003 ||| || || || |||||| | ||| |||||| |||| || ||||||||||| Sbjct 4869 AACCGTAAATCAAATCAGAAGAATATTGGAGTCATCAAGTGCTCGAACCTTTGCACGGAG 4928 Query 76004 ATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTT 76063 ||| ||||||| ||| ||||||||| || || ||||| | || || || || ||| Sbjct 4929 ATTATAGAGTATACATCAAAGGATGAGGTTGCGGTGTGCAACCTCGCCTCCATTGCACTT 4988 Query 76064 CCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACA 76123 ||| | ||| || | |||| | | | |||| | | || |||| |||| Sbjct 4989 CCACGCTTTGTGGATAAGGAGAAAAGAATGTATGATCACCAGCGGCTGTATGAGGTCACG 5048 Query 76124 AAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAG 76180 |||||||| || |||||||| || ||||| ||||| | || |||||| || ||| Sbjct 5049 AAGATTGTCACAAAAAATCTTAATCGAGTGATTGATCGTAACCATTATCCTGTACCCGAG 5108 Query 76181 ACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCG 76240 | ||| ||| || || | | || ||||| | || || ||||| | ||| Sbjct 5109 TC-ACGCCGAAG--CAACGAGCTTAATCGTCCCATTGGAATTGGCGTACAAGGAATGGCG 5165 Query 76241 GATGTATTTATTTTG-TGCCGCTACGCATTTGATTCAGATGAAGCCAAGGA-GATGAATG 76298 || ||||| || ||| ||||| ||||| | | | || |||| | |||||| Sbjct 5166 GACACGTTTATCCTGATGCGGCTAC-CATTTACATGCCA-GGAGGCAAGAACTTTGAATG 5223 Query 76299 CTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAG 76358 ||| |||||||| || || ||| || ||||||| || ||| | || |||| Sbjct 5224 AAGATATTTTTGAAACGATTTACTACGGTGCCGTGGAGGCAAGCGTGGAACTCGCGGAAG 5283 Query 76359 CCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTG 76418 |||| | |||| | |||| || |||||| || ||||| || || |||| Sbjct 5284 TGGAAGGGCCTTATGCGCGGTTTGCAGGCAGTCCCGCATCGCAAGGCCAACTACAATTTG 5343 Query 76419 ATATGTGGGAAGGTGAAACCAAG----CTCAACTACGACTGGGATGTTCTCAAGGAACGC 76474 || |||||| || ||||||| | | | || ||||| | | ||| ||| Sbjct 5344 ATCTGTGGG-AGCAGAAACCACGAAGTGGCCGTTGGGATTGGGACGCATTGAAGAGACGT 5402 Query 76475 ATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCA 76532 ||| | | | ||| | || | | || || | |||| |||||||| || || |||| Sbjct 5403 GTCATGAAAAGTGGTATGCGGA--ATTCGTTACTATTGGCTCCAATGCCCACTGCATCCA 5460 Query 76533 CCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTG 76591 | | || || |||||| || ||||| ||||||||||||| || |||| |||||| || Sbjct 5461 CTTCGCAGATACTTGGG-AACAATGAGTGCTTTGAACCATTTACCTCAAATATCTACGTG 5519 Query 76592 AGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAG 76651 | || || ||||||||| | || |||||| |||| || | || || | Sbjct 5520 CGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTTAACAAGTACCTTGTGATGGATCTTATT 5579 Query 76652 AAGATTGGTCTCTGGTCCAAGGATATG---AAGGATCTCATGG--TGAAAGCGGGTGGTT 76706 ||| ||||| ||| | | || ||| || | | || | | || ||| | Sbjct 5580 AAGCGGGGTCTGTGGAACGAAGAGATGCGCAACCAGATTATTGCCTACAA-----TGGCT 5634 Query 76707 CCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGG 76766 | | ||||| || | || ||| |||| ||||| | | || || ||||||| Sbjct 5635 CGGTACAAAACATTAAGGGCATTCCAAATGACCTCAAGGAGTTGTATCGTGTTGTGTGGG 5694 Query 76767 AAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAA 76826 |||| | ||| ||| | ||||| ||||| | || ||||| |||||||| || | Sbjct 5695 AAATTCGGCAGAAGGATCTTATTGAGATGGCTGTGGACCGTGGCAAGTTCATTGACCAGA 5754 Query 76827 GTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCA---AGCTCTCTTCTATGC 76883 ||||||| ||||||| || |||||| |||||| |||| |||| | ||||||| Sbjct 5755 GTCAAAGCTTGAATCTGTTTTTGGAAAATCCAAC---TTCCAGCCAGCTGACATCTATGC 5811 Query 76884 ATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 | | | || ||| ||| || ||||| || || ||||| || Sbjct 5812 ACTTTTTTGCCTGGGAACGTGGCCTCAAGACGGGCATGTATTA 5854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596396937843520