Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5537 127 6e-24 >seq5537 Length=6528 Score = 127 bits (140), Expect = 6e-24 Identities = 554/869 (64%), Gaps = 17/869 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTC 155644 |||| || || || || || |||||| ||| | | | | ||||| |||| |||||| Sbjct 4983 CAATGGAGGCGAGGTTGCACACCGCAACCTCATCCT--TTGATGTATACTCTATAATCTC 4926 Query 155645 ACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACA 155704 ||| ||||| || | ||||||| || | ||||||||| || ||||||| |||||| Sbjct 4925 CGTGCAAAGGTTCGAGCACTTGATGACTCCAATATTCTTCTGATTTGATTTACGGTTACA 4866 Query 155705 AGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAG 155764 ||||||||||| || ||| | ||| || || |||||||| | || || || | Sbjct 4865 TGCATCCTTGTAAAGCATGAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATAGCAAA 4806 Query 155765 CCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATA 155824 ||| ||| | || | | ||| | || |||| || || | || Sbjct 4805 CCACAGGGATTGAGCTTGCACAGTCTTCACGCCTCGATTTTCCCTTTCGTACCCCTCGTA 4746 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 | | | |||| |||||||| || ||||||||||| || | ||| ||| | Sbjct 4745 TAACTTCTTAAAATCATCACCGTAGCAGTCACTCAGTCCTGGCGCCGTATGCGGGTCCAT 4686 Query 155885 CAGCGACCAAATTTTATTACCGATT-ACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 || || ||| ||| | | || ||||||||||| || | ||| ||||| || Sbjct 4685 CAACGTCCAC-TTTCCTCCGCTCTTCACACGCTCCATGAAGAGGTCAGGAATCCAAAGAG 4627 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT---CTTCCGTAGCTCTA 156000 | || || | || | ||| | || || | ||| ||| |||| || | Sbjct 4626 CGTAAAACAAATCTCGCGCCCTCTGGTCTTCCTTACCGGTATTTTTCTTCAAAAG----A 4571 Query 156001 AGAATTCCTCA-ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059 |||| | |||||| ||| ||||| | || || ||||| || || | Sbjct 4570 AGAAAATTAAAGATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGT 4511 Query 156060 TTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 |||||||| || |||||||| || || || ||||| | |||| |||||| || | | Sbjct 4510 TTGCCACCGCCTTGGTCTACATAGCGTGCCGTGTTATTCCAAACACGTAGCATCGGTACA 4451 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 | || || || |||||| || || ||| | ||||| |||| | ||| || Sbjct 4450 AGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTTCCAGAACAGCGGATATTGTGC 4391 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 | ||| | ||||||||||| | ||||| || || |||| ||| | |||| Sbjct 4390 ACATGAACGCCAATACCACCAGCGGATTTACTTATAACGGCACATTGCTTCAATGTATCA 4331 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGT 156296 |||| || |||||| || || ||| | | ||| | || ||||| | |||||| Sbjct 4330 TAAATCCCCTCAATACTGTCCTCACGCATGGCAACAAGAAAACAAGAACTCATTTGAGGA 4271 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 || ||||| |||||||||| ||| ||||| ||||| |||| | | | |||||| Sbjct 4270 AAAGGCGTTCCGGCGTTGAATAATGTCGGTGTGGCATGTGTAAAGTCCCCAAGTGACATA 4211 Query 156357 TAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTC 156416 | || ||||||||||| | || | || |||||||||| | || ||| | | Sbjct 4210 TGGTCATATGTCTCCTTTACGCGTTCCATATCCTCACCGTGAATACCAAGAGCGACGCGC 4151 Query 156417 ATCCACATATGCTGAGGACGCTCTACAAT 156445 | |||| |||| ||||| || |||| Sbjct 4150 AAAAACATTAGCTGCGGACGTTCCGCAAT 4122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471380969670898