Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq14056 100 3e-16 seq11307 96.9 3e-15 seq5537 93.3 4e-14 seq11306 86.0 6e-12 >seq14056 Length=822 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || ||| | ||||| || || ||| | Sbjct 463 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATTGCACTCGAGGTGGAGTCCAGC 522 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || || || || Sbjct 523 GATACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 582 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || |||||||||||| | | | |||| || ||| Sbjct 583 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCAGACTACAAC 642 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| | ||| |||| ||||||| ||| Sbjct 643 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGC 690 >seq11307 Length=654 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||||| || || ||| | Sbjct 617 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCCAGC 558 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 557 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 498 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | | |||| || ||| Sbjct 497 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAAC 438 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || || ||||| || || || ||| | ||| |||| |||| || || | | ||||| Sbjct 437 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGTGGCGGTGTGATGGAGCCG 378 Query 24944 ACG 24946 ||| Sbjct 377 ACG 375 >seq5537 Length=6528 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTT 139457 ||| || ||| |||||| || || |||||||| | |||| | | |||||| |||||| | Sbjct 4664 CTTCACACGCTCCATGAAGAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGCGCCCT 4605 Query 139458 CTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCA 139517 || |||||| ||| | || |||| ||| |||| ||| | ||| | ||||| Sbjct 4604 CTGGTCTTCCTTACCGGTATTTTTCTTCAAAAGAAGAAAATTAAAGATATCACCATGCCA 4545 Query 139518 TGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCA---CCTTGATCGACGTGTCG 139574 || || | |||||||| | |||||||| ||||||||| ||||| || || | || Sbjct 4544 AGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGTTTGCCACCGCCTTGGTCTACATAGCG 4485 Query 139575 TACAGCATTATTGAATACGCGCAACATCGG 139604 | | | ||||| | || || | |||||| Sbjct 4484 TGCCGTGTTATTCCAAACACGTAGCATCGG 4455 >seq11306 Length=946 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || ||| | || || || || || || || || ||||||| || || | Sbjct 731 ACCATGCAAATTTTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCT 672 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| || | || | || || |||||||| ||||| || || || || || || Sbjct 671 AGCGATACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAC 612 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| || || || ||||||||||| | | | |||| || Sbjct 611 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTAC 552 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || || || ||| | ||| |||| ||||||| || Sbjct 551 AACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGG 502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449767388387120