Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq11307 140 3e-28 seq11292 134 1e-26 seq11306 129 6e-25 seq14056 127 2e-24 seq5537 109 5e-19 >seq11307 Length=654 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || | | |||| ||| |||||| ||||||||||| Sbjct 421 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 479 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 480 AGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTT 539 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| |||||| ||| |||||| |||| | || || ||||| ||||| || Sbjct 540 CACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGT 599 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 600 CTTCACGAAGATCTGCATG 618 >seq11292 Length=3062 Score = 134 bits (148), Expect = 1e-26 Identities = 325/485 (67%), Gaps = 9/485 (2%) Strand=Plus/Plus Query 120370 TTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTG 120429 || ||||| |||||||| || |||| || || || | | |||||| ||||| ||||| Sbjct 801 TTTTCAAAGAAGTTTGTCTTTCCCTGCAATGAGATCATTTCCATAAAGTCGAATGGGTTC 860 Query 120430 CTCGCGTTAAAGTATTTCGGCTGGCCCAACTGT-ACGAGCAGTCGGTCCGCTACAAACTC 120488 | | ||| ||| | | ||| || || | | ||||||||| || |||||||| Sbjct 861 TTTGAGTTGTAGTGACGCTCATTGCC-AAGTGCCAACAACAGTCGGTCTGCCACAAACTC 919 Query 120489 AATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGT 120548 |||||| |||| | ||||||||| ||||||||| ||| || | || Sbjct 920 GATGTACGTTGACATCAGGTCCGCGTTCATCCCCAGCAACCGCACAGGGATGGCGTCACA 979 Query 120549 GAAAAACTCCTTCTCAATGTCCACCGC-CTCCTTG-AACATGGCGAGCATAGTGTGGCCG 120606 || ||||| |||||| |||||||| || | || || |||| ||| | Sbjct 980 GATGAACTCACGCTCAATATCCACCGCACTGCAAATAATATCGCGA--ATACGCTCCTTT 1037 Query 120607 GGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCC 120666 || | ||||| | ||| || ||| |||||||||||||||||||||||| ||| Sbjct 1038 GGTAGCTTGTTCACAATGTAGTTTTCGTACAACAGGCACGCAAAGTCCGTGTGCAAGCCT 1097 Query 120667 TCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTG 120726 ||||| ||||| || || || || || || ||||| |||||||| | ||| |||| Sbjct 1098 TCGTCACGCGAAATGAGTTCATTACTGAAAGTCAGCCCGGGCATCAGGCCCCGTTTCTTC 1157 Query 120727 ATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCG 120786 | | || | ||| ||| ||| |||||||| | || ||||| |||||||| Sbjct 1158 AGCCAAAACAGCGCGCAGAAGGAGCCGGAAAAGAAAATACCTTCCACCGCCGCAAAGGCA 1217 Query 120787 ACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGGCC 120846 || | || ||||| || || | ||||| ||||||| || ||||| | |||| Sbjct 1218 ACAAGACGTTCGGCAAA---CGAACTGCTGCTGCGGATCCACCGAATCGCCCAGTTGGCC 1274 Query 120847 TTTTT 120851 ||||| Sbjct 1275 TTTTT 1279 >seq11306 Length=946 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || | | |||| ||| |||||| ||||||||||| Sbjct 532 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 590 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 591 AGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTT 650 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| | | |||||| |||| | || || ||||| ||||| || Sbjct 651 CACGTTCTCAATGGTATCGCTAGACTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGT 710 Query 133643 TTTTACGAAAATCTGCATGG 133662 || || ||||| ||||||| Sbjct 711 CTTCACAAAAATTTGCATGG 730 >seq14056 Length=822 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || | | |||| | | | ||||| ||||||||||| Sbjct 659 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCA-TCCTCCAGCTGCTTGCC 601 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 600 AGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTT 541 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| ||| |||||| |||| | | || ||||| ||||| || Sbjct 540 CACGTTCTCAATGGTATCGCTGGACTCCACCTCGAGTGCAATCGTCTTGCCCGTCAGTGT 481 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 480 CTTCACGAAGATCTGCATG 462 >seq5537 Length=6528 Score = 109 bits (120), Expect = 5e-19 Identities = 287/433 (66%), Gaps = 4/433 (1%) Strand=Plus/Minus Query 147939 GCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCC-CATGCGCCATGCGTA 147997 ||||| |||| | || | || |||||||||||||||||||| | | | ||| || | Sbjct 5875 GCAGCCGGTTTGCTCCGTAAGTAATACATGCCCGTCTTGAGGCCACGTTC-CCAGGCAAA 5817 Query 147998 GTCGTGCACCGACGACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTG 148057 ||||| || | || | || | || || | || ||||||||| || || Sbjct 5816 AAAGTGCATAGATGTCAGCTGGCTGGAAGTTGGATTTTCCAAAAACAGATTCAAGCTTTG 5757 Query 148058 GCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCAT 148117 ||||||||||||||| ||||||||| | ||||| ||||| || ||| | || Sbjct 5756 ACTCTGGTCAATGAACTTGCCACGGTCCACAGCCATCTCAATAAGATCCTTCTGCCGAAT 5697 Query 148118 CTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCAC 148177 ||||| | |||| | ||||| | || |||||||| | ||| || || Sbjct 5696 TTCCCACACAACACGATACAACTCCTTGAGGTCATTTGGAATGCCCTTAATGTTTTGTAC 5637 Query 148178 CGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGAT 148237 |||||| || |||| |||||| |||||||| || || | | || ||| || Sbjct 5636 CGAGCCATTGTAGGCAATAATCTGGTTGCGCATCTCTTCGTTCCACAGACCCCGCTTAAT 5577 Query 148238 CAGGT-CATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 || | |||| | || |||| || ||||| ||||||| || ||||| || |||| Sbjct 5576 AAGATCCATC-ACAAGGTACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCA 5518 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | || ||||| |||||||| |||| ||||| || | ||||||| || | Sbjct 5517 CGTAGATATTTGAGGTAAATGGTTCAAAGCACTCATTGTTCCCAAGTATCTGCGAAGTGG 5458 Query 148357 TTGCCGTGGGCAT 148369 ||| |||||||| Sbjct 5457 ATGCAGTGGGCAT 5445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483280885934960