Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11292 190 3e-42 >seq11292 Length=3062 Score = 190 bits (210), Expect = 3e-42 Identities = 382/561 (68%), Gaps = 8/561 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 || ||||| |||||||| || || |||| | || | || || || ||||| Sbjct 1684 GAACCGCTTCTGCGCGAGAATCCTGACCGTTACGTGATCTTTCCGATTAAATACCACGAT 1625 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | | |||| || ||||||| | | | ||||| | ||||| ||||| | Sbjct 1624 ATCTGGAAGAAGTAC-AAGGAGGCCGAAAGCAGCATCTGGACGGTGGAGGAAATCGACTT 1566 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 || ||| || |||||| | ||||||| | ||| | ||| |||||||| Sbjct 1565 GAGCAGTGACTTGGCGGACTGGGAAAAGATGAGCGAGGGGGAGAGGTTTTTTATCAAGCA 1506 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| || || || ||| || || || ||||| || ||| ||||||||||| || | Sbjct 1505 CGTGCTGGCGTTCTTT-GCTGCAAGTGATGGAATTGTGCTGGAGAACCTGGCGCAGCGGT 1447 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || || ||| | || |||| |||| || |||||||||||||| ||||| | Sbjct 1446 TCATGACGGAAGTACAAGTACCGGAGGTGCGTTGCTTCTACGGGTTCCAGATTGCCATTG 1387 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||| | || || ||||| |||||| | ||| | |||| ||| | | ||| ||| | Sbjct 1386 AGAACGTACATTCGGAAACATACTCGGTGCTGTTGGACATGTACATTACGGATCCGACGG 1327 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||||||| | | | |||||| || | || | | |||||||||| ||| Sbjct 1326 AGAAGGACCGTATGCTGCACGCCATTTCAACAATTCCATGCATTCAGAAAAAGGCCAACT 1267 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 ||||||| ||||||| | || || ||| |||||||| || || || | ||| Sbjct 1266 GGGCGATTCGGTGGATCCGC-AGCAGCAGTTCG----TTTGCCGAACGTCTTGTTGCCTT 1212 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 ||| || || || || || || || || ||| |||||||| | |||||||| ||||| Sbjct 1211 TGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGCGCGCTGTTTTGGCTGAAGAA 1152 Query 1456255 GCGCGGCCTCATGCCCGGTCT 1456275 || ||||| |||||||| || Sbjct 1151 ACGGGGCCTGATGCCCGGGCT 1131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175577954142948