Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5537 114 2e-20 >seq5537 Length=6528 Score = 114 bits (126), Expect = 2e-20 Identities = 279/423 (66%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 69591 CTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCT 69650 ||| || || | ||| || || || |||||||||||||| ||| | ||||| | || Sbjct 4664 CTTCACACGCTCCATGAAGAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGCGCCCT 4605 Query 69651 ATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCA 69710 | ||||| || || |||||||| || | | ||||| | | |||||| |||||| Sbjct 4604 CTGGTCTTCCTTACCGGTATTTTTCTTCAAAAGAAGAAAATTAAAGATATCACCATGCCA 4545 Query 69711 TGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCT 69770 || |||| || || || | | | || ||||| || || || |||| || | Sbjct 4544 AGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGTTTGCCACCGCCTTGGTCTACATAGCG 4485 Query 69771 GGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCC 69830 || |||||||| | || | |||||||| | || || || || | |||||||| || Sbjct 4484 TGCCGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCC 4425 Query 69831 AGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCAT 69890 || ||| || ||||| ||| ||||| | | | || || || || || Sbjct 4424 AGCAATGTAGCTTCCAGAACAGCGGATATTGTGCACATGAACGCCAATACCACCAGCGGA 4365 Query 69891 TTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTAT 69950 |||| || | ||||| | |||||||| ||||| || ||||| || || || || Sbjct 4364 TTTACTTATAACGGCACATTGCTTCAATGTATCATAAATCCCCTCAATACTGTCCTCACG 4305 Query 69951 CATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGT 70010 |||| || ||||||||| | ||||||| || ||||| || || |||||||| Sbjct 4304 CATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGCGTTCCGGCGTTGAATAATGT 4245 Query 70011 AGG 70013 || Sbjct 4244 CGG 4242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686709991420560