Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11292 120 2e-22 seq12385 86.0 5e-12 >seq11292 Length=3062 Score = 120 bits (132), Expect = 2e-22 Identities = 293/437 (67%), Gaps = 8/437 (2%) Strand=Plus/Minus Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 ||||||| |||||||| || || || || || || || ||| ||||| | Sbjct 1500 TGGCGTTCTTTGCTGCAAGTGATGGAATTGTGCTGGAGAACCTGGCGCAGCGGTTCATGA 1441 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||| ||| |||| || | || || || || ||||| || |||||||| || || Sbjct 1440 CGGAAGTACAAGTACCGGAGGTGCGTTGCTTCTACGGGTTCCAGATTGCCATTGAGAACG 1381 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | |||||||||| ||| | ||| | || | |||||| | ||| | |||||| Sbjct 1380 TACATTCGGAAACATACTCGGTGCTGTTGGACATGTACATTACGGATCCGACGGAGAAGG 1321 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCC 44092 | || || | | || || |||| | || ||| ||| | | || || ||||||| Sbjct 1320 ACCGTATGCTGCACGCCATTTCAACAATTCCATGC-ATTCAGAAAAAGGCCAACTGGGCG 1262 Query 44093 CTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152 || ||||| | ||| |||| ||||| ||||| || ||||| | ||| Sbjct 1261 ATTCGGTGGATCCGCAGCAGCAGTTCGTTTGCCGAACGTCTTGTTGCCTTTGCGGCGGTG 1202 Query 44153 GAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 ||||| ||||||||||| || || || ||| || | |||||| | |||||||| || | Sbjct 1201 GAAGGTATTTTCTTTTCCGGCTCCTTCTGC-GCGCTGTTTTGGCTGAAGAAACGGGGCCT 1143 Query 44212 GATGCCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 |||||| ||| |||| ||||| ||||| | || ||||| |||||||| || Sbjct 1142 GATGCCCGGGCTGAC--TTTCAGTAATGAACTCATTTCGCGTGACGAAGGCTTGCACACG 1085 Query 44270 GATTTTGCTTGCTTGTT 44286 || ||||| ||| |||| Sbjct 1084 GACTTTGCGTGCCTGTT 1068 >seq12385 Length=5078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 174/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT-GT 19607 |||||| |||| || | ||||| || || || || |||||||| | ||| ||| | || Sbjct 3509 TTGCACCTTATCATTTTTGATGAGTTTGATGCCATTTGTAAGCAGCGTGGTGCTGTTCGT 3568 Query 19608 AAAT-----GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | | || || |||||| ||| || |||||||| || | ||| | || || || Sbjct 3569 GACTCCACGGGTGTGAATGACAATGTGGTGAATCAACTTCTCGCCAAAATCGATGGGGTG 3628 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 || |||| ||| || | ||||||||||||| ||| || |||| | || ||| Sbjct 3629 AATTCGTTGAACAATGTTCTCCTTATTGGCATGACCAATCGAATGGATCTCATTGACGAA 3688 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| | |||| || |||||||| || | | | || |||| | | || ||||| Sbjct 3689 GCCATCCTACGCCCAGGTCGGTTTGAGGTGCATGTGGAGATTAGCCTCCCAAATGAAGAG 3748 Query 19783 GGACGTGTGGAAATTTT 19799 || || | ||||||||| Sbjct 3749 GGTCGAGAGGAAATTTT 3765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397343842139770