Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5537 170 2e-37 seq19605 86.0 8e-12 >seq5537 Length=6528 Score = 170 bits (188), Expect = 2e-37 Identities = 687/1062 (65%), Gaps = 35/1062 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCT-- 110426 || ||||| || |||||||| || ||| ||| || | | |||||||| | |||| Sbjct 5854 TAATACATGCCCGTCTTGAGGCCACGTTCCCAGGCAAAAAAGTGCATAGATGTCAGCTGG 5795 Query 110427 -TGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGC 110485 |||| |||||| |||||| || || |||| |||||||| ||||||||||| Sbjct 5794 CTGGAA---GTTGGATTTTCCAAAAACAGATTCAAGCTTTGACTCTGGTCAATGAACTTG 5738 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 || || | | ||||| ||||| | ||||||| | ||||||||| || ||||| Sbjct 5737 CCACGGTCCACAGCCATCTCAATAAGATCCTTCTGCCGAATTTCCCACACAACACGATAC 5678 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 | | ||||| |||| ||| || | || || || | || || | | Sbjct 5677 AACTCCTTGAGGTCATTTGGAATGCCCTTAATGTTTTGTACCGAGCCATTG---TAGGCA 5621 Query 110606 ATGAGATCCTT---CATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGG 110662 || | | || ||| || | | ||| ||||| ||| | || || | || ||| Sbjct 5620 ATAATCTGGTTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATAAGATCCATCACAAGG 5561 Query 110663 TGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTG 110722 | |||||| || | ||||||||| || || | || |||||| |||| || Sbjct 5560 TACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTA 5501 Query 110723 TATGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGGAGGCTGTTGGCATTGG 110781 ||||||||||||| ||||| || |||||| || || | ||||| || || |||||||| Sbjct 5500 AATGGTTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGG 5442 Query 110782 TGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 |||| | || || | | || | ||| | | | ||| ||| ||| | | ||| Sbjct 5441 AGCCAATAGTAACGAAT--TCCGCATACCACTTTTCATGACACGTCTCTTCAATGCGTCC 5384 Query 110840 CAGTCGTAGTTGAG----CTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTG 110895 || || | | | ||||||| || |||||| ||||| || || ||||| Sbjct 5383 CAATCCCAACGGCCACTTCGTGGTTTCTGCT-CCCACAGATCAAATTGTAGTTGGCCTTG 5325 Query 110896 GGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 110955 || |||||| || |||| |||| | |||| |||| || | ||| ||| Sbjct 5324 CGATGCGGGACTGCCTGCAAACCGCGCATAAGGCCCTTCCACTTCCGCGAGTTCCACGCT 5265 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC-TCCTTGGCTT 111014 ||||||| || ||| || || |||||||| ||| |||||| | |||| || Sbjct 5264 TGCCTCCACGGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTTCTTGCCTC 5205 Query 111015 CATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCC 111073 | | | ||||| ||||| ||| || ||||| ||||| | ||||| || || Sbjct 5204 C-TGGCATGTAAATG-GTAGCCGCATCAGGATAAACGTGTCCGCCATTCCTTGTACGCCA 5147 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAA 111130 | ||||| || | | || || ||| ||| | ||| || |||||| Sbjct 5146 ATTCCAATGGGACGATTAAGCTCGTTG--CTTCGGCGT-GACTCGGGTACAGGATAATGG 5090 Query 111131 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTT 111190 || | ||||| ||||| || |||||||| || |||||||| |||| |||| || Sbjct 5089 TTACGATCAATCACTCGATTAAGATTTTTTGTGACAATCTTCGTGACCTCATACAGCCGC 5030 Query 111191 TCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAA 111250 | | |||| | | | |||| | || ||| | |||||| || || || || | Sbjct 5029 TGGTGATCATACATTCTTTTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCGAGG 4970 Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||| || || ||||||||| ||| ||||||| ||| || || || | ||| || Sbjct 4969 TTGCACACCGCAACCTCATCCTTTGATGTATACTCTATAATCTCCGTGCAAAGGTTCGAG 4910 Query 111311 CTCTTAATCGTCCCCAA-ATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAG 111369 | ||| || | | |||| |||||| || || || ||| || ||||||||||| || Sbjct 4909 CACTTGAT-GACTCCAATATTCTTCTGATTTGATTTACGGTTACATGCATCCTTGTAAAG 4851 Query 111370 CATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 |||| | || ||||| ||| |||| |||| ||| ||||| Sbjct 4850 CATGAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATAGC 4809 >seq19605 Length=5274 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 1003 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 1062 Query 145344 GGTAGGA 145350 ||||||| Sbjct 1063 GGTAGGA 1069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627850231838400