Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5537 217 2e-51 seq11292 102 1e-16 >seq5537 Length=6528 Score = 217 bits (240), Expect = 2e-51 Identities = 686/1054 (65%), Gaps = 17/1054 (2%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||| ||||| ||||||||||| || | | ||||||| | | ||||| || | || || Sbjct 5855 GTAATACATGCCCGTCTTGAGGCCACGTTCCCAGGCAAAAAAGTGCATAGATGTCAGCTG 5796 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | |||||| |||||| || || |||| ||||| || || ||||| || Sbjct 5795 GCTGGAAGTTGGATTTTCCAAAAACAGATTCAAGCTTTGACTCTGGTCAATGAACTTGCC 5736 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || ||| | ||||| ||||| | ||||||| | |||||||||||| | || | Sbjct 5735 ACGGTCCACAGCCATCTCAATAAGATCCTTCTGCCGAATTTCCCACACAACACGATACAA 5676 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||| | |||| ||| || || || ||||| | || ||| | | | || Sbjct 5675 CTCCTTGAGGTCATTTGGAATGCCCTTAATGTTTTGTACCGAGCCATTG---TAGGCAAT 5619 Query 118082 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 118138 | | || ||| || | ||| ||||| ||| | |||||| ||| || | Sbjct 5618 AATCTGGTTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATAAGATCCATCACAAGGTA 5559 Query 118139 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 118198 ||| || || ||| ||||||||| || || | || |||||||| | || | Sbjct 5558 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 5499 Query 118199 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 ||| ||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 5498 TGGTTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 5440 Query 118258 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT 118317 ||| || | || || | ||| ||| | | | ||| ||| | |||||||| | Sbjct 5439 CCAATAGTAACGAATTCCGCATACCACTTTTCATGACACGTCTCTTCAATGCGTCCCAAT 5380 Query 118318 CGTAGTTGAG-CTTTGTC--TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACG 118374 | | | ||| || | | || ||||| |||||| || || ||||| || | Sbjct 5379 CCCAACGGCCACTTCGTGGTTTCTGCTCCCACAGATCAAATTGTAGTTGGCCTTGCGATG 5320 Query 118375 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 118434 | || || |||| | |||| || || || || ||||| | ||| ||| |||| Sbjct 5319 CGGGACTGCCTGCAAACCGCGCATAAGGCCCTTCCACTTCCGCGAGTTCCACGCTTGCCT 5260 Query 118435 CGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 118494 | | ||| ||| || || ||||||||||| |||||| | | ||||| | | Sbjct 5259 CCACGGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTTCTTGCCTCCTGGC 5200 Query 118495 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 118554 | ||| | || || || ||||| ||||| | ||||| || || | |||| Sbjct 5199 ATGTAAATGGTAGCCGCATCAGGATAAACGTGTCCGCCATTCCTTGTACGCCAATTCCAA 5140 Query 118555 TTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTAT 118611 | || |||| | || |||| | | | ||| || |||||| || | || Sbjct 5139 TGGGACGATTAAGCTCGTTG--CTTCGGCGTGA-CTCGGGTACAGGATAATGGTTACGAT 5083 Query 118612 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 118671 | || || | ||| |||||||| ||||||| ||| |||| |||| ||| | || || Sbjct 5082 CAATCACTCGATTAAGATTTTTTGTGACAATCTTCGTGACCTCATACAGCCGCTGGTGAT 5023 Query 118672 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 118731 || | | | |||| | || ||| | ||||| || || || || || || |||| Sbjct 5022 CATACATTCTTTTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCGAGGTTGCACA 4963 Query 118732 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAA 118791 | | ||||||||| || ||||||||||| |||||||| | ||| || | ||| | Sbjct 4962 CCGCAACCTCATCCTTTGATGTATACTCTATAATCTCCGTGCAAAGGTTCGAGCACTTGA 4903 Query 118792 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 118851 || || | ||||| |||||||| || |||||| |||||||||||||||||| | | Sbjct 4902 TGACTCCAATATTCTTCTGATTTGATTTACGGTTACATGCATCCTTGTAAAGCATGAAAG 4843 Query 118852 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 | ||||| ||| | || || | ||| ||||| Sbjct 4842 GGACGCCCGTTTCCATCTGCGATTCGAGTATAGC 4809 >seq11292 Length=3062 Score = 102 bits (112), Expect = 1e-16 Identities = 149/209 (71%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| ||| ||| | || |||||||| || ||||||||||| ||| ||| || Sbjct 1077 GCAAAGTCCGTGTGCAAGCCTTCGTCACGCGAAATGAGTTCATTACTGAAAGTCAGCCCG 1136 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || ||||| ||||||| ||| || | ||| || || ||||| || ||||| || Sbjct 1137 GGCATCAGGCCCCGTTTCTTCAGCCAAAACAGCGCGCAGAAGGAGCCGGAAAAGAAAATA 1196 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GGGACTTTGTATCAAA 130194 || ||||| ||| || |||| ||||| || ||||| || | | || | || Sbjct 1197 CCTTCCACCGCCGCAAAGGCAACAAGACGTTCGGCAAACGAACTGCTGCTGCGGAT---- 1252 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCT 130223 |||| |||||||| | |||||||||| Sbjct 1253 CCACCGAATCGCCCAGTTGGCCTTTTTCT 1281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618256209392240