Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5537 134 2e-26 seq11292 86.0 7e-12 >seq5537 Length=6528 Score = 134 bits (148), Expect = 2e-26 Identities = 681/1070 (64%), Gaps = 33/1070 (3%) Strand=Plus/Plus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| ||||| ||| | || || | || || || || | |||||||||||| | Sbjct 4801 TGTGGTTTGCTATACTCGAATCGCAGATGGAAACGGGCGTCCCTTTCATGCTTTACAAGG 4860 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 | || ||||||| || ||||| |||||| | || || |||||| | || || || | Sbjct 4861 ATGCATGTAACCGTAAATCAAATCAGAAGAATATTGGAGTCATCAAGTGCTCGAACCTTT 4920 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAA 105065 | || || || | || | |||| || |||||| || ||||| |||||||| || | Sbjct 4921 GCACGGAGATTATAGAGTATACATCAAAGGATGAGGTTGCGGTGTGCAACCTCGCCTCCA 4980 Query 105066 TCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACG 105125 | || || || | ||||||| |||| || | | |||| | | || | | Sbjct 4981 TTGCACTTCCACGCTTTGTGGATAAGGAGAAAAGAATGTATGATCACCAGCGGCTGTATG 5040 Query 105126 AAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG 105185 | || ||||| | |||||| ||||| || || |||| |||||| | || ||| || | Sbjct 5041 AGGTCACGAAGATTGTCACAAAAAATCTTAATCGAGTGATTGATCGTAACCATTATCCTG 5100 Query 105186 TT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGG 105242 | ||| | || || | | | | | ||||| ||||| | || || || | Sbjct 5101 TACCCGAGTCACGCCG--AAGCAACGAGCTTA-ATCGTCCCATTGGAATTGGCGTACAAG 5157 Query 105243 GTCTCGCGGATGTATTCATTCTT-TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAA 105301 | | ||||| || || || || || || ||||| | | | || || ||| | Sbjct 5158 GAATGGCGGACACGTTTATCCTGATGCGGCTAC-CATTTACATGCCAGGAGGC-AAGAAC 5215 Query 105302 ATC-AATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTT 105360 | |||| || ||||| || || || ||| || | ||||| || || | Sbjct 5216 TTTGAATGAAGATATTTTTGAAACGATTTACTACGGTGCCGTGGAGGCAAGCGTGGAACT 5275 Query 105361 GGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCT 105420 || || || || || || |||| |||| || ||| || || ||||| || Sbjct 5276 CGCGGAAGTGGAAGGGCCTTATGCGCGGTTTGCAGGCAGTCCCGCATCGCAAGGCCAACT 5335 Query 105421 TCAATTTGATATGTGGGAAGGTGAGACCAAGCTT----CACTACGACTGGGAAGCTCTCA 105476 ||||||||| ||||||| | || |||| | | | || ||||| || | | Sbjct 5336 ACAATTTGATCTGTGGGA-GCAGAAACCACGAAGTGGCCGTTGGGATTGGGACGCATTGA 5394 Query 105477 AGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAG 105536 || ||| ||| | | | ||| | || || | || ||||||||||||| || | Sbjct 5395 AGAGACGTGTCATGAAAAGTGGTATGCGGAATTCGTTACTATTGGCTCCAATGCCCACTG 5454 Query 105537 CCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATC 105595 | ||||| | || || |||||| || ||||| ||||||||||| | || | || ||| Sbjct 5455 CATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTTTGAACCATTTACCTCAAATATC 5513 Query 105596 TATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGAC 105655 || || | || || || |||||| | || |||||| | || ||| || Sbjct 5514 TACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTTAACAAGTACCTTGTGATGGAT 5573 Query 105656 CTCAAAGAGATTGGTCTCTGGTCCAAGGATATG---AAGGATCTCATGG--TGAAAGCGG 105710 || | || ||||| ||| | | || ||| || | | || | | || Sbjct 5574 CTTATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAACCAGATTATTGCCTACAA---- 5629 Query 105711 GTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAG 105770 ||| || | ||||| ||| || ||||||||||| | ||| ||||||| || | Sbjct 5630 -TGGCTCGGTACAAAACATTAAGGGCATTCCAAATGACCTCAAGGAGTTGTATCGTGTTG 5688 Query 105771 TTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTG 105830 | |||||||| | ||||||| | ||||| ||||| | || ||||| ||||||| Sbjct 5689 TGTGGGAAATTCGGCAGAAGGATCTTATTGAGATGGCTGTGGACCGTGGCAAGTTCATTG 5748 Query 105831 ATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCA---AGCTCTCTT 105887 | || |||||||| ||||||| || |||||| |||||| |||| |||| | | Sbjct 5749 ACCAGAGTCAAAGCTTGAATCTGTTTTTGGAAAATCCAAC---TTCCAGCCAGCTGACAT 5805 Query 105888 CTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 |||||||| | | ||| | || ||||| ||||| ||||||||| Sbjct 5806 CTATGCACTTTTTTGCCTGGGAACGTGGCCTCAAGACGGGCATGTATTAC 5855 >seq11292 Length=3062 Score = 86.0 bits (94), Expect = 7e-12 Identities = 161/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 ||||| |||| |||| || ||||| || || || | ||||| || |||| || Sbjct 1306 GCCATTTCAACAATTCCATGCATTCAGAAAAAGGCCAACTGGGCGATTCGGTGG----AT 1251 Query 94783 ACAAAGTCGC-GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 94841 | || || |||| ||||| || || || | || |||||| || || ||||| || Sbjct 1250 CCGCAGCAGCAGTTCGTTTGCCGAACGTCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTT 1191 Query 94842 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 94901 ||| || || ||||||||||| | | |||||| ||||| || || || ||||| || || Sbjct 1190 CTTTTCCGGCTCCTTCTGCGCGCTGTTTTGGCTGAAGAAACGGGGCCTGATGCCCGGGCT 1131 Query 94902 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||| || || || || || |||||||| || | ||| || |||||| Sbjct 1130 GACTTTCAGTAATGAACTCATTTCGCGTGACGAAGGCTTGCACACGGACTTTGCG 1076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583091989742960