Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5537 107 6e-18 seq12898 86.0 2e-11 seq12795 86.0 2e-11 >seq5537 Length=6528 Score = 107 bits (118), Expect = 6e-18 Identities = 189/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 206449 TGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCATTAGAA 206508 ||||| | ||| || || || ||||| | || | |||||| || | || || || || Sbjct 4498 TGGTCTACATAGCGTGCCGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGAC 4439 Query 206509 GTTCCATTTGTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTAATCCA 206568 |||||||| || ||| | || |||| | | ||||| || | ||| | ||| Sbjct 4438 TGGCCATTTGTCCCAGCAATGTAGCTTCCAGAACAGCGGATATTGTGCACATGAACGCCA 4379 Query 206569 ATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTCCATCA 206628 || || || || |||| ||| ||||||| || ||||||| |||||| || ||| Sbjct 4378 ATACCACCAGCGGATTTACTTATAACGGCACATTGCTTCAATGTATCATAAATCCCCTCA 4319 Query 206629 ACACTATCACTTTC-CATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCGTTCC 206687 | ||| || || | ||| |||| | |||||||||||| | ||| || |||||||| Sbjct 4318 ATACTGTC-CTCACGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGCGTTCC 4260 Query 206688 AGCATTAAATAAAGTAGGAGTAGCATGTGTAAA 206720 || || ||||| || || || ||||||||||| Sbjct 4259 GGCGTTGAATAATGTCGGTGTGGCATGTGTAAA 4227 >seq12898 Length=3211 Score = 86.0 bits (94), Expect = 2e-11 Identities = 216/329 (66%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| || || || | || | || || | || | | || ||| | || Sbjct 1091 AAGATGAAGGAGATCGCAGAGACGTACCTGGGCGAGAAGGTCAAGAACGCCGTTGTGACG 1150 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || ||||| |||||||||||||| | || || || || |||| || ||| Sbjct 1151 GTGCCCGCTTATTTCAATGATGCCCAGCGGCAGTCGACGAAGGACGCCGGCACGATCGCG 1210 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 ||| | |||||| | | || || || || || || || || || ||||| || || || Sbjct 1211 GGGCTGAATGTTGTGCGCATCATCAACGAGCCGACAGCCGCCGCCATTGCTTACGGCCTG 1270 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 | || | | || || || || ||| | || || | || || || || ||| Sbjct 1271 AACAA------GGCCGGCGAGAAGAACATCCTTGTGTTCGACCTTGGGGGCGGCACCTTT 1324 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || | || || | || ||||| ||||||| ||| ||||| || || Sbjct 1325 GATGTTTCGTTGCTGACGATCGACGAGGGCTTTTTTGAGGTTGTGGCAACGAACGGGGAC 1384 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAA 349890 || |||||||| || || || ||||| || Sbjct 1385 ACGCATCTTGGCGGCGAGGACTTTGACAA 1413 >seq12795 Length=4040 Score = 86.0 bits (94), Expect = 2e-11 Identities = 216/329 (66%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| || || || | || | || || | || | | || ||| | || Sbjct 937 AAGATGAAGGAGATCGCAGAGACGTACCTGGGCGAGAAGGTCAAGAACGCCGTTGTGACG 996 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || ||||| |||||||||||||| | || || || || |||| || ||| Sbjct 997 GTGCCCGCTTATTTCAATGATGCCCAGCGGCAGTCGACGAAGGACGCCGGCACGATCGCG 1056 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 ||| | |||||| | | || || || || || || || || || ||||| || || || Sbjct 1057 GGGCTGAATGTTGTGCGCATCATCAACGAGCCGACAGCCGCCGCCATTGCTTACGGCCTG 1116 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 | || | | || || || || ||| | || || | || || || || ||| Sbjct 1117 AACAA------GGCCGGCGAGAAGAACATCCTTGTGTTCGACCTTGGGGGCGGCACCTTT 1170 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || | || || | || ||||| ||||||| ||| ||||| || || Sbjct 1171 GATGTTTCGTTGCTGACGATCGACGAGGGCTTTTTTGAGGTTGTGGCAACGAACGGGGAC 1230 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAA 349890 || |||||||| || || || ||||| || Sbjct 1231 ACGCATCTTGGCGGCGAGGACTTTGACAA 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514804883682662