Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10799 158 1e-33 seq5692 100 3e-16 >seq10799 Length=11388 Score = 158 bits (174), Expect = 1e-33 Identities = 365/547 (67%), Gaps = 11/547 (2%) Strand=Plus/Plus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| | | ||||||| ||| ||||| | | ||| | || || || || | | Sbjct 7392 AACTCCCTCACGCTGTGCTGCTCGCCCGTCGCCAGCACCCAGTCGTCAGGCTTCTCCGCC 7451 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||| | | || ||||||| |||||||||||||| ||| |||| Sbjct 7452 TGCAGCATGAGCCACATGCCGTACACATAGTCCTTCGCGTGCCCCCAGTCACGCAGGGCA 7511 Query 124614 TCCAGGTTTCCGAG------CTCGATTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCC 124667 | || ||| || || ||| | || | || ||||| | | | |||| | || Sbjct 7512 TTCACGTTGCCAAGAAGCAGCTCCTTCTGCAGGCCCTTCTTGATGCGCACCGC---AGCC 7568 Query 124668 AGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGA 124727 | |||||| |||||||||| | |||||||| ||||||||||| || ||| Sbjct 7569 CGCACAATCTTCTTCGTCACAAACGTCGCGCCGCGTCGTGGCGACTCGTGGTTAAATAGA 7628 Query 124728 ATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCA 124787 ||||| | ||||||||||| ||||||||||| |||||||| || |||||| | | Sbjct 7629 ATGCCGTTGCACGCAAACATACCGTACGACTCACGGTAGTTCACTGTGATCCAAAAGGCG 7688 Query 124788 AAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTA 124847 | ||||| | ||| | || ||||| || |||| ||| || || || || | || | Sbjct 7689 TACAGCTTTGCCACCGCGTACGGGCTGCGCGGGTGGAAGGGCGTCTTCTCCGTCTGCGGC 7748 Query 124848 GGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGAATTTTGAA 124907 | ||| | ||| ||| | | ||| || | ||||| ||||| | | | Sbjct 7749 ACCTCCTGCACCTTGCCATAGAGCTCGCTGGTGCTTGCCTGGTAGAAGCGGCACGTCTCC 7808 Query 124908 ATAGAATTCGTTTG-ACGAATTGCCTCCAAGATCCGAAGGGTTCCCATGGCGTCCACATT 124966 || | | ||| | || || | ||| | |||| || || || ||| ||||| | Sbjct 7809 AT-CAGGTTGTTGGCGCGTATGGACTCGAGGATCTTCAGCGTGCCAATGCCGTCCGTCTG 7867 Query 124967 GGCGGTATACTCGGGCTGATCAAAAGACAGTTTCACATGGGACTGGGCACCTAGGTTGTA 125026 | || |||||||| ||||| |||| ||| ||||| || || || | |||||||| Sbjct 7868 CCCCGTGTACTCGGGTGTGTCAAAGGACACTTTTACATGCGATTGTGCGGCGAGGTTGTA 7927 Query 125027 CACCTCG 125033 ||||||| Sbjct 7928 CACCTCG 7934 >seq5692 Length=10617 Score = 100 bits (110), Expect = 3e-16 Identities = 215/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 117983 GGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCC 118042 ||||| || ||| |||||||| | | ||| || ||||| ||||| || || ||||| Sbjct 4164 GGCCAATAGTGGTGAATCATGTTGATGATGAGGCCTTTGATGTGGGAGCCATCATGATCC 4105 Query 118043 GCATCGGTCATGATCATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGTTATAAACCTTA 118102 ||| | ||||||||||||| | ||||| || || | || | | | || | | Sbjct 4104 TGATCAGACATGATCATCAGGTGTCCGTAGCGCAACCGTTCCACGCTGCTGTATTTTTGA 4045 Query 118103 CCATGTTGGAGCCCGAGGATCTTTTTAA--GGTTGGAAAATTCCTCATTTTCCGTCACCT 118160 | | | || || | |||||| | | | ||| ||| || || || | || | Sbjct 4044 CGAATGTCAAGGCCCATGATCTTACTGACAGCTTG--AAACTCTGCACACGCCATTACTT 3987 Query 118161 GTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACT 118220 ||| | || ||||| || |||||| | || || || |||| |||||||||||||| | Sbjct 3986 TTTTCAGTGTTGCGTCTCGCACGTTGAGGGGTTTTCCACGCAACGGAAACACGCCAAAGT 3927 Query 118221 TGTCACGGCCCACAACGCTCAAG-CCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCG 118279 ||||||| || ||| |||| ||||| || ||| ||||| || ||||| ||||| Sbjct 3926 AGTCACGGTCCTTCACG-GCAAGTCCGGCCGTACAAAGTGCCTTTGCTGAGTCCCCCTCT 3868 Query 118280 GTAATAATAAGAGTGCA 118296 || | ||||| ||||| Sbjct 3867 GTGAGGATAAGGGTGCA 3851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547057622009200