Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14056 185 1e-41 seq11306 185 1e-41 seq11307 167 3e-36 seq10799 127 2e-24 seq11292 93.3 5e-14 >seq14056 Length=822 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| ||| | || ||||| ||||| | Sbjct 463 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATTGCACTCGAGGTGGAGTCCAGC 522 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 523 GATACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 582 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||||| || || || |||||||| || Sbjct 583 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCAGACTACAAC 642 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || |||||||| Sbjct 643 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGG 689 >seq11306 Length=946 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || |||||||| || | || ||||| ||||| | Sbjct 728 ATGCAAATTTTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCTAGC 669 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 668 GATACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 609 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||| | ||| || || |||||||| || Sbjct 608 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAAC 549 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || |||||||| Sbjct 548 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGG 502 >seq11307 Length=654 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || | || ||||| ||||| | Sbjct 617 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCCAGC 558 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 557 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 498 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||| | ||| || || |||||||| || Sbjct 497 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAAC 438 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || || || || Sbjct 437 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGTGGCGG 391 >seq10799 Length=11388 Score = 127 bits (140), Expect = 2e-24 Identities = 220/325 (68%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 24584 CGAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTA 24643 |||||| || ||||| | || || || || || || |||| |||||| ||||||||| Sbjct 7934 CGAGGTGTACAACCTCGCCGCACAATCGCATGTAAAAGTGTCCTTTGACACACCCGAGTA 7875 Query 24644 CACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNN 24703 ||||| | ||| | | ||||| || | || || || | || ||| Sbjct 7874 CACGGGGCAGACGGACGGCATTGGCACGCTGAAGATCCTCGAGTCCATACGCGCCAACAA 7815 Query 24704 NNNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCA 24763 || | | | || || ||||| | || || ||| | | |||||||||||| Sbjct 7814 CCTGATGGAGACGTGCCGCTTCTACCAGGCAAGCACCAGCGAGCTCTATGGCAAGGTGCA 7755 Query 24764 GGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAA 24823 |||| ||| ||| |||||| || || || | ||||| |||||||| | ||| |||| Sbjct 7754 GGAGGTGCCGCAGACGGAGAAGACGCCCTTCCACCCGCGCAGCCCGTACGCGGTGGCAAA 7695 Query 24824 GGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAA 24883 | ||| ||| | ||||| || ||||||||||||| | | || || | ||| ||||| Sbjct 7694 GCTGTACGCCTTTTGGATCACAGTGAACTACCGTGAGTCGTACGGTATGTTTGCGTGCAA 7635 Query 24884 CGGAATTCTGTTCAACCATGAGTCG 24908 ||| ||||| || ||||| |||||| Sbjct 7634 CGGCATTCTATTTAACCACGAGTCG 7610 >seq11292 Length=3062 Score = 93.3 bits (102), Expect = 5e-14 Identities = 331/506 (65%), Gaps = 16/506 (3%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT--GAATCGTGGGTCGTCGTTTGGTCAGCGTC 64720 |||||||| | ||||| || |||||||| | | | || ||||||| | |||| Sbjct 1279 AAAAAGGCCAACTGGGCGATTCGGTGGATCCGCAGCAGCAGT--TCGTTTGCCGAACGTC 1222 Query 64721 TCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCT 64780 | | || ||||| |||||||| ||||||||||| || || ||||| | | || | Sbjct 1221 TTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGCGCGCTGTTTT 1162 Query 64781 GGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGG 64840 |||| || || |||||||||||||| || ||| | || || || || || || || | Sbjct 1161 GGCTGAAGAAACGGGGCCTGATGCCCGGGCTGACTTTCAGTAATGAACTCATTTCGCGTG 1102 Query 64841 ACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTC---AGCCACCTCAAGGACAA 64895 |||| || | ||| || |||||| | || ||| | | | || | | |||| Sbjct 1101 ACGAAGGCTTGCACACGGACTTTGCG--TGCCTGTTGTACGAAAACTACATTGTGAACAA 1044 Query 64896 ACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATT 64955 | | || | | | ||| ||||| | || || || ||||| || || Sbjct 1043 GCTACCAAAGGAGCGTATTCGCGATATTATTTGCAGTGCGGTGGATATTGAGCGTGAGTT 984 Query 64956 CATTACTGCCGCGCTTCCGTGT-CGTCTCATCGGCATGGATGCCGATAAGATGAAACAGT 65014 ||| || ||| | ||| ||| || | | || ||| | || || |||| | || Sbjct 983 CATCTGTGACGC-CATCCCTGTGCGGTTGCTGGGGATGAACGCGGACCTGATGTCAACGT 925 Query 65015 ATATCGAATTTGTAGCAGATCGCCTGCT-TACTCAGTTTGGTATTAAGCCCTACTGGAAT 65073 | ||||| ||||| ||||| || ||| | | || |||| | | ||| ||| || Sbjct 924 ACATCGAGTTTGTGGCAGACCGACTGTTGTTGGCA-CTTGGCAATGAGCGTCACTACAAC 866 Query 65074 TCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTT 65133 || || ||||| |||| ||||| | |||| || |||| ||||| ||||| ||| Sbjct 865 TCAAAGAACCCATTCGACTTTATGGAAATGATCTCATTGCAGGGAAAGACAAACTTCTTT 806 Query 65134 GAAAAGAGGGTAGGTGATTACTCAAA 65159 ||||||| ||| ||||| || ||||| Sbjct 805 GAAAAGAAGGTCGGTGAATA-TCAAA 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570145337912480