Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1649 107 2e-18 >seq1649 Length=2817 Score = 107 bits (118), Expect = 2e-18 Identities = 365/558 (65%), Gaps = 12/558 (2%) Strand=Plus/Minus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||| ||||||||||| || || |||| || ||||||||||| ||||| || | | Sbjct 2308 GTACACGTGAGCGTCACCAAGAGTGTGCACCAACTCTCCCGGCCGCAGCCCCGTCGCCTT 2249 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 || || | || | ||| | |||| ||| ||||| || || || || || ||||| Sbjct 2248 TGCGATGAGAATGGTCAAGAGGGCGTAGGAGGCAATGTTGAACGGGACGCCAAGGCCCAT 2189 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30075 ||| | || | |||||| | | ||||| || || || | ||||||||| ||||| Sbjct 2188 GTCACATGAGCGCTGGTACAACATGCACGACAGTTCCCCATTGCTCACGTAGAACTGTGC 2129 Query 30076 CATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 30135 | ||||||||| || || ||||| | ||| | | || ||||| || | Sbjct 2128 GAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCTTGGATTCCATGCCGTGAA 2069 Query 30136 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC-GGCGTTTTGCAGCTGAT 30194 || || || | || || || || || ||| || || || ||| | |||| Sbjct 2068 GAGCATCCGGCGATCGTCAGGATTTGTCTTGAGCGTTTCAACAATTGTCTTG-ATTTGAT 2010 Query 30195 CCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTACTCTGCTCCGAAATGCCTC 30253 |||||||| || |||| || | |||| || ||||| || || || || || | | Sbjct 2009 CCACCCCCTGTCCGTCATAGT-TGGCATCATGGTGTGTGTAGTCGGCGCCAAAGTGACGC 1951 Query 30254 CACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC---GAAGCCCCTC 30310 ||||| || ||||| || || || ||| ||| || ||| || ||| || ||| | Sbjct 1950 CACTGAAAGCCGTAGACAGGACCGAGG--TCCATC-TCCTCGTACTCCGTGAGGCCACGA 1894 Query 30311 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGC 30370 |||| | ||| | | ||| |||||| ||||||| || | || ||||| ||| | | Sbjct 1893 CTGTCAAGAAACGCACGGGAGCCGTTGTCGTCCCATATGTGGACGCCCTTGTCACTTAAC 1834 Query 30371 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCA 30429 | |||| | ||| || | | |||||||| || ||||| ||| || | ||| Sbjct 1833 TTCTTGGCATATGTTTCACCCCGTAGAAACCACAGTAGTTCCTCGCAC-ACACCACGCCA 1775 Query 30430 AAAGACCCTCTTGGTCGT 30447 ||| |||| ||| || || Sbjct 1774 AAAAACCCGCTTTGTTGT 1757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406195743522168