Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11307 91.5 9e-14 seq11306 86.0 4e-12 >seq11307 Length=654 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| ||| | || || ||| |||||| || ||||| || |||| Sbjct 391 CCGCCACGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 450 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || || || || | ||||| ||||||||||| Sbjct 451 AGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 510 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||| ||||| | |||||| Sbjct 511 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCAATGGTGTCGCTGGACTCCAC 569 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | | ||||| || || || | || ||||| || ||||||||| Sbjct 570 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 618 >seq11306 Length=946 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||| | || || ||| |||||| || ||||| || |||| || || || Sbjct 511 AGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGA 570 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || | ||||| ||||||||||| | |||||| Sbjct 571 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCC 630 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT---CTCCACTTCCACG 34665 ||||| |||| || | || ||| | | || || ||||| |||||| || | Sbjct 631 TTGTCCTGGATC-TTCGCCTTCACGTTCTCAATG-GT-ATCGCTAGACTCCACCTCGAGC 687 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | ||||| || || || | || ||||||||||| |||||| Sbjct 688 GCGATCGTCTTGCCCGTCAGTGTCTTCACAAAAATTTGCATG 729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314640786650882