Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11306 111 1e-19 seq11307 102 7e-17 seq14056 93.3 4e-14 >seq11306 Length=946 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 513 GCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACC 572 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 573 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTT 632 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | |||||||| |||||||| || | || ||| Sbjct 633 GTCCTGGATCTTCGCCTTCACGTTCTCAATGGTATCGCTAGACTCCACCTCGAGCGCGAT 692 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGC 39292 | || |||||||| || || ||||| |||||||| || ||| Sbjct 693 CGTCTTGCCCGTCAGTGTCTTCACAAAAATTTGCATGGTTCCGC 736 >seq11307 Length=654 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 402 GCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACC 461 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 462 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTT 521 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | || ||||| |||||||| || | || ||| Sbjct 522 GTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGCGCGAT 581 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||||||| || || || ||||| ||||| Sbjct 582 CGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 617 >seq14056 Length=822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || |||||| ||| || || || || || || || || || || | Sbjct 678 GCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCC 619 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 618 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTT 559 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | |||||||| |||||||| || | | || Sbjct 558 GTCCTGGATCTTCGCCTTCACGTTCTCAATGGTATCGCTGGACTCCACCTCGAGTGCAAT 499 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||||||| || || || ||||| ||||| Sbjct 498 CGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429424386795602