Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1649 102 6e-17 >seq1649 Length=2817 Score = 102 bits (112), Expect = 6e-17 Identities = 374/575 (65%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 27145 GGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGT 27204 || || ||||||| ||| ||||||||||| || || ||||| || ||||||||||| Sbjct 2325 GGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGAGTGTGCACCAACTCTCCCGGC 2266 Query 27205 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 27264 ||||| || | | || || | || | ||| | |||| ||| ||||| || Sbjct 2265 CGCAGCCCCGTCGCCTTTGCGATGAGAATGGTCAAGAGGGCGTAGGAGGCAATGTTGAAC 2206 Query 27265 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCG 27324 || || || || |||||||| | || | |||||| | | ||||| || || |||| | Sbjct 2205 GGGACGCCAAGGCCCATGTCACATGAGCGCTGGTACAACATGCACGACAGTTCCCCATTG 2146 Query 27325 CTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 27384 || ||||| ||||| | ||||||||| || || ||||| | ||| | | Sbjct 2145 CTCACGTAGAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCTT 2086 Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC- 27443 || ||||| || | || || || | || || || || || ||| || || Sbjct 2085 GGATTCCATGCCGTGAAGAGCATCCGGCGATCGTCAGGATTTGTCTTGAGCGTTTCAACA 2026 Query 27444 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCAT-GTCCGTGTACT 27502 || ||| | |||||||||||| || |||| | | |||| || ||||| | Sbjct 2025 ATTGTCTTG-ATTTGATCCACCCCCTGTCCGTCATAGT-TGGCATCATGGTGTGTGTAGT 1968 Query 27503 CTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 27562 | || || || || | ||| || || ||||| || || || ||| ||| || ||| || Sbjct 1967 CGGCGCCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGG--TCCATC-TCCTCGT 1911 Query 27563 GCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 27619 ||| || ||| | |||| | ||| | | ||| |||||| ||||||| || | | Sbjct 1910 ACTCCGTGAGGCCACGACTGTCAAGAAACGCACGGGAGCCGTTGTCGTCCCATATGTGGA 1851 Query 27620 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 27679 | ||||| || | || |||| | ||| || | | |||||||| || |||| Sbjct 1850 CGCCCTTGTCACTTAACTTCTTGGCATATGTTTCACCCCGTAGAAACCACAGTAGTTCCT 1791 Query 27680 C-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 27713 | ||| || | |||||| |||| ||| || || Sbjct 1790 CGCAC-ACACCACGCCAAAAAACCCGCTTTGTTGT 1757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369402928994174