Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq11307 167 2e-36 seq14056 161 7e-35 seq11306 154 1e-32 >seq11307 Length=654 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| |||||| |||||| ||||||||||| || ||| Sbjct 391 CCGCCACGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 450 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| || || ||||||| |||||||| || | || Sbjct 451 AGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 510 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| |||| | |||| | ||||||||| ||| ||||| Sbjct 511 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCAATGGTGTCGCTGGACTCCAC 569 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| | || |||||||| ||||| || |||||||||||||| |||||| Sbjct 570 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 618 >seq14056 Length=822 Score = 161 bits (178), Expect = 7e-35 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||| ||||| |||||| |||||| ||||||||||| || Sbjct 693 CATGCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 634 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| ||| | || ||||||||||| || || ||||||| |||||||| || | Sbjct 633 TGCGAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGG 574 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| ||||| |||| | ||||| ||| ||| | Sbjct 573 CGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC-GTTCTCAATGGTATCGCTGGACT 515 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | | ||||||||| ||||| || |||||||||||||| |||||| Sbjct 514 CCACCTCGAGTGCAATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 462 >seq11306 Length=946 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||| ||||| |||||| |||||| ||||||||||| || Sbjct 499 ATACCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCT 558 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 ||||| ||| |||| ||||||||||| || || ||||||| |||||||| || | Sbjct 559 GCGAGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGC 618 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| |||||| |||| | |||| | ||||| ||| || || Sbjct 619 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCAATGGTATCGCTAGACTC 677 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| | || |||||||| ||||| || |||||||| || ||||||||| Sbjct 678 CACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAAAATTTGCATG 729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359888814534018