Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq11307 138 3e-27 seq11306 134 3e-26 seq14056 132 1e-25 >seq11307 Length=654 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||| | ||||||||||| | ||| Sbjct 614 CAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCCAGCGAC 555 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 554 ACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAGCAG 495 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || || || || ||| || Sbjct 494 CGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAACATC 435 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| ||||| Sbjct 434 CAGAAGGAGTCCACGCTGCACCTTGT 409 >seq11306 Length=946 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 |||||||| ||||| || || || || || |||||| | ||||||||||| ||| Sbjct 725 CAAATTTTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCTAGC--- 669 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || ||||| |||||||| || ||||| |||||||| || || || || ||||||||| Sbjct 668 GATACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 609 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||| || || ||||| || || || | || || || || || ||| Sbjct 608 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAAC 549 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| ||||| Sbjct 548 ATCCAGAAGGAGTCCACGCTGCACCTTGT 520 >seq14056 Length=822 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || ||||| | ||||||||||| | || Sbjct 466 CAGATCTTCGTGAAGACACTGACGGGCAAGACGATTGCACTCGAGGTGGAGTCCAGCGAT 525 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 526 ACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAGCAG 585 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | || || || || || ||| || Sbjct 586 CGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCAGACTACAACATC 645 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| ||||| Sbjct 646 CAGAAGGAGTCCACGCTGCACCTTGT 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203374100349876