Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq763 118 2e-21 seq1609 86.0 1e-11 >seq763 Length=1889 Score = 118 bits (130), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGG 230474 ||||||||||| || || ||| | |||| |||| |||| ||||| || | || ||| Sbjct 814 GAGTTCATTTGCGATGC-ATTACCTGTCCGCTTAATTGGAATGAATTCTCAGCTGATGAC 756 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 |||||||| || || || ||||| || | | || | | || ||||| || Sbjct 755 TCAGTACATTGAGTTTGTCGCCGATCGGCTCCTGGTGTCCTTGGGGTACGACCGTCATTA 696 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 |||||| |||||||| |||| || ||||| | ||||| ||||| ||||| || ||||| Sbjct 695 CAACTCGAAGAACCCATTTGACTTCATGGATATGATTTCTCTTCAGGGGAAAACTAACTT 636 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAAGCCCGAA 230646 ||||| ||| || |||| ||||||| | |||||||||||| ||||| Sbjct 635 TTTCGAGAAGAAGGTTGGTGAGTATCAGAAGGCTGGTGTGATGAGTTCCGAA 584 >seq1609 Length=16429 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 165703 AACGCTTG-CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 ||||| || ||| |||||||||||||||||||||| | || |||| | |||||||||| Sbjct 7917 AACGCGTGGCCCTTCTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGG 7858 Query 165762 GTTCGAGCCCCACG 165775 |||||||||||||| Sbjct 7857 GTTCGAGCCCCACG 7844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057796540872380