Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq763 131 2e-25 >seq763 Length=1889 Score = 131 bits (144), Expect = 2e-25 Identities = 271/398 (68%), Gaps = 9/398 (2%) Strand=Plus/Plus Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || || | |||||||||| || || |||||||||||||| || ||| |||||| ||| Sbjct 951 AAGGTGAGCCCGGGCATCAAGCCACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCA 1010 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 || || ||||| || ||||| | |||||||||| || | ||||| | || Sbjct 1011 GAGAAAAATATGCCTTCGACAGCCGCAAACGCGA-----CGAGCCGCGTAGGGAACGAAG 1065 Query 17135 T-TGT-TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 | || | | |||||||| | |||| | ||| |||| || || || ||||| Sbjct 1066 TCTGACTGCCAATCCATTCAATCGCCCATTTGGCCTTTTTCTCAATACACGGAATCGTCC 1125 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 |||||| | | | | | ||||| | | || | | |||||||||||| | | Sbjct 1126 TTATGGCATGTAGCAGTCGTTGCTTTTCGTCGGGATCCACAACATACGTATCGATCAACA 1185 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||| | || || || || || ||||| || ||||| || || || || ||||| Sbjct 1186 CGGAGTATGTCTCAGAATGGATATTTTCCATAGCAATCTGGAACCCATAGAAACATCGAA 1245 Query 17313 CTTCCGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 |||| | || || ||||| ||| | ||| |||||||| || || || ||| ||||| Sbjct 1246 CTTCAGGTACCTGCACTTCGCACAT-GAACCGTTCCGCAAGGTTCTCCAGCACAATGCCA 1304 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||| || ||||| || ||||| | ||| || ||||| Sbjct 1305 TCGCTTGCCGCGAAGAAAGCCAACACATGTTTGATGAA 1342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532493157680