Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq763 107 2e-18 >seq763 Length=1889 Score = 107 bits (118), Expect = 2e-18 Identities = 276/414 (67%), Gaps = 11/414 (3%) Strand=Plus/Plus Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297 || || |||||| || || | ||| ||||| || || ||||||||||| || || Sbjct 936 ATCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCAAGCCACGCTTCTTTAACCAAAAAATG 995 Query 16298 GCAGCA-AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 || ||| || || || || || ||||| || || |||| ||||| |||| || | Sbjct 996 GC-GCAGAACGAGCCAGAGAAAAATATGCCTTCGACAGCCGCAAACGCGA-----CGAGC 1049 Query 16357 CGCGTACGTA--GCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTT 16414 |||||| | | | | | | | | |||||||| |||||| ||| |||| | Sbjct 1050 CGCGTAGGGAACGAAGTCTGACTGCCAATCCATTCAATCGCCCATTTGGCCTTTTTCTCA 1109 Query 16415 ATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATA 16474 ||||| ||||| |||||| | | || | | ||||| | ||| | | | Sbjct 1110 ATACACGGAATCGTCCTTATGGCATGTAGCAGTCGTTGCTTTTCGTCGGGATCCACAACA 1169 Query 16475 TACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAAT 16534 |||||||| |||| | ||| | || || || || || || || || ||||| || Sbjct 1170 TACGTATCGATCAACACGGAGTATGTCTCAGAATGGATATTTTCCATAGCAATCTGGAAC 1229 Query 16535 CCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTT 16593 |||||||| |||||| | || | || || ||||| ||| | || |||||||| ||||| Sbjct 1230 CCATAGAAACATCGAACTTCAGGTACCTGCACTTCGCACAT-GAACCGTTCCGCAAGGTT 1288 Query 16594 CTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||| ||| || || || ||||| || || || ||||| | || || ||||| Sbjct 1289 CTCCAGCACAATGCCATCGCTTGCCGCGAAGAAAGCCAACACATGTTTGATGAA 1342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511401448430320