Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1878 105 8e-18 >seq1878 Length=84023 Score = 105 bits (116), Expect = 8e-18 Identities = 287/436 (66%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||||| |||||| || ||||||||||| ||| | ||| | || | | | || Sbjct 21743 ACTCGTTCCATAAACAGGTCAGGAATCCACAGACCGTAAAACAAGTCCCGCGCACGCTGA 21802 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| || || ||||| || || ||| |||||| | | ||||| | ||||| || Sbjct 21803 TCCTCCTTGCCCGTATTTTTCTTCAGAAGGAGGAAACCAAAGATATCCGCGTGCCAGGGC 21862 Query 54149 TCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 54208 ||||| || || | | | || || ||| || ||||| || | || | ||| Sbjct 21863 TCCAAATAAATAGCAAAGGCGCCCTTGCGCTTGCCACCGCCCTGGTCAACATAGCGAGCA 21922 Query 54209 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 54268 |||||||| | || | | ||| || | | |||||| || | |||||| ||||||| | Sbjct 21923 GTGTTATTCCACACACGAAGCATGGGGACCAGACCATTCGACGTACCATTTGTCCCGGCG 21982 Query 54269 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTA 54328 || ||||| || || ||||| || || | || ||||| || || ||| Sbjct 21983 ATGTAGCTCCCCGCTGCGCGAATGTTGTGCATGTGGATCCCGATCCCACCAGCTGATTTG 22042 Query 54329 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 54388 ||| | || || |||| | || || |||||||| || ||||| || || ||| Sbjct 22043 CTGATGATCGCACACTGTTTGAGTGTGTCGTAGATGCCATCAATACTGTCTTCACGCATA 22102 Query 54389 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACT--AGTTCCCGCATTAAATAAGGTAG 54446 | ||||| || | ||||| ||| || | || |||||||| ||||| || | Sbjct 22103 GCTACAAGAAAGCATGAACTCATTT-GTG-GGAATGGGGTCCCCGCATTGAATAACGTTG 22160 Query 54447 GAGAAGCGTGCGTAAA 54462 ||| |||||| ||||| Sbjct 22161 GAGTAGCGTGGGTAAA 22176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593706564000480