Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq763 208 8e-49 seq1149 114 1e-20 >seq763 Length=1889 Score = 208 bits (230), Expect = 8e-49 Identities = 417/615 (68%), Gaps = 5/615 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || ||| || |||||| ||| | ||| || ||||| || | ||||| ||| Sbjct 1510 GAGCCACTTCTGACAGAAAACCCCGACCGCTACGTTATCTTCCCTATCAAGTACCCTGAC 1451 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAG-GCGTCGTTCTGGACCGTCGAGGAGGTGGACCT 116694 || |||| | |||||| |||| ||| || | | |||||| || ||||| | ||||| Sbjct 1450 ATATGGCAGAAGTACAAGGAGGCGGAGAGCAGCAT-CTGGACGGTGGAGGAAATCGACCT 1392 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || |||| || || |||||| || ||||| |||||| || |||||||| || Sbjct 1391 TGGGAATGACATGACAGATTGGGAGAAGCTGGACGACGGCGAGCGACACTTCATCAAACA 1332 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| |||| || ||||| || ||||| ||||| || ||||| || | || || || Sbjct 1331 TGTGTTGGCTTTCTTCGCGGCAAGCGATGGCATTGTGCTGGAGAACCTTGCGGAACGGTT 1272 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || |||||||| | || | || || ||||| || || ||||| || ||||| Sbjct 1271 CATGTGCGAAGTGCAGGTACCTGAAGTTCGATGTTTCTATGGGTTCCAGATTGCTATGGA 1212 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 || | || || || | || || | ||||| ||||| || | | || || Sbjct 1211 AAATATCCATTCTGAGACATACTCCGTGTTGATCGATACGTATGTTGTGGATCCCGACGA 1152 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| || || | | ||||| |||||| ||||| | | | |||||| | || Sbjct 1151 AAAGCAACGACTGCTACATGCCATAAGGACGATTCCGTGTATTGAGAAAAAGGCCAAATG 1092 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 |||| | ||||| | |||| || | | ||| ||| || || || || || Sbjct 1091 GGCGATTGAATGGATTG---GCAGTCAGACTTCGTTCCCTACGCGGCTCGTCGCGTTTGC 1035 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 ||| ||||| ||| | || || || ||| ||| |||||| |||||| | ||||| || Sbjct 1034 GGCTGTCGAAGGCATATTTTTCTCTGGCTCGTTCTGCGCCATTTTTTGGTTAAAGAAGCG 975 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 ||| | |||||||| || || |||||||||||||| || || | || ||||||||||| Sbjct 974 TGGCTTGATGCCCGGGCTCACCTTCAGCAACGAGCTGATTTCACGTGATGAGGGTCTGCA 915 Query 117175 TTGCGACTTTGCCTG 117189 |||||||| || Sbjct 914 CACTGACTTTGCTTG 900 >seq1149 Length=36903 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||||||||| | | || || || |||| | Sbjct 9828 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAAACCATTGCTCTTGAGGTTGAGGCCAGC 9769 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| ||||| ||||| ||||| |||| || Sbjct 9768 GACACCATTGAGAACG-TAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGATCA 9710 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | || || || ||| |||| || | ||||| || |||||||| Sbjct 9709 GCAGCGGTTGATTTTTGCCGGGAAGCAGTTGGAGGAGGGTCGCACGCTTGCGGACTACAA 9650 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || ||||| || || Sbjct 9649 CATTCAGAAGGAGTCGACACTGCACCTGGT 9620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206152073760