Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1149 95.1 8e-15 >seq1149 Length=36903 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| | ||| || | || Sbjct 9617 AGTACCAGGTGCAGTGTCGACTCCTTCTGAATGTTGTAGTCCGCAAGCGTGCGACCCTCC 9676 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || || ||||| | ||||||||| || || | | ||||||||| Sbjct 9677 TCCAACTGCTTCCCGGCAAAAATCAACCGCTGCTGATCCGGAGGGATACCCTCCTTGTCC 9736 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | || | ||| | | || || || | | |||||| Sbjct 9737 TGAATCTTGGCCTTTACGTTCTCAATGGTGTCGCTGGCCTCAACCTCAAGAGCAATGGTT 9796 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| |||||||| ||||||||||| Sbjct 9797 TTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 9828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323064022746560