Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1149 127 2e-24 >seq1149 Length=36903 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||| |||||| || ||||||||||||||||||||| || |||| | || || Sbjct 9619 TACCAGGTGCAGTGTCGACTCCTTCTGAATGTTGTAGTCCGCAAGCGTGCGACCCTCCTC 9678 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || ||||| || ||||||||||| || || ||||| | ||||||||||||| Sbjct 9679 CAACTGCTTCCCGGCAAAAATCAACCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTG 9738 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | | | |||| | |||| ||||| | | ||| || || Sbjct 9739 AATCTTGGCCTTTACGTTCTCAATGGTGTCGCTGGCCTCAACCTCAAGAGCAATGGTTTT 9798 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 ||| || || || ||||| ||||| |||||| ||| Sbjct 9799 GCCAGTGAGGGTTTTCACGAAGATCTGCATGGTGC 9833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395065444852546