Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq763 221 1e-52 seq1878 176 4e-39 >seq763 Length=1889 Score = 221 bits (244), Expect = 1e-52 Identities = 613/929 (66%), Gaps = 12/929 (1%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || || |||||| || ||| || ||| | | || || || || || | || || Sbjct 1513 GAGGAGCCACTTCTGACAGAAAACCCCGACCGCTACGTTATCTTCCCTATCAAGTACCCT 1454 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGA-AGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||||| ||| | | |||||| |||| || |||| | | | |||| || || ||| | || Sbjct 1453 GACATATGGCAGAAGTACAAGGAGGCGGAGAGCAGCATCT-GGACGGTGGAGGAAATCGA 1395 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 ||| || || ||| |||||||| || | || ||| || | || || || Sbjct 1394 CCTTGGGAATGACATGACAGATTGGGAGAAGCTGGACGACGGCGAGCGACACTTCATCAA 1335 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||| |||||||| || ||||| ||| |||||| ||||| ||||| | | ||| | Sbjct 1334 ACATGTGTTGGCTTTCTTCGCGGCAAGCGATGGCATTGTGCTGGAGAACCTTGCGGAACG 1275 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 || |||||||| || | || | |||| || || || || || | || || Sbjct 1274 GTTCATGTGCGAAGTGCAGGTACCTGAAGTTCGATGTTTCTATGGGTTCCAGATTGCTAT 1215 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 ||||| | ||||| || | || || | | ||||||||||| || ||| ||| Sbjct 1214 GGAAAATATCCATTCTGAGACATACTCCGTGTTGATCGATACGTATGTTGTGGATCCCGA 1155 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 ||| || | ||||| | | || || || || || || | || ||||| | Sbjct 1154 CGAAAAGCAACGACTGCTACATGCCATAAGGACGATTCCGTGTATTGAGAAAAAGGCCAA 1095 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTT 57985 ||| | || ||||||| || || | | ||||| | | |||| ||||||| Sbjct 1094 ATGGGCGATTGAATGGATTGGCAGT--CA-GACTTCGTTCCCTACGCGGCTCGTCGCGTT 1038 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGA 58044 || || |||||||| ||||| || || ||| || |||| || | |||||| | |||| Sbjct 1037 TGCGGCTGTCGAAGGCATATTTTTCTCTGGCTCGTTCTGCGCCATT-TTTTGGTTAAAGA 979 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 | || ||| |||||||||| || || || ||||||||| |||| || || || ||||||| Sbjct 978 AGCGTGGCTTGATGCCCGGGCTCACCTTCAGCAACGAGCTGATTTCACGTGATGAGGGTC 919 Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCAC---ATTGTCAATAAACCGACGCGGG 58161 | || ||||| ||||| |||||| | ||| | || || || || | | || ||| Sbjct 918 TGCACACTGACTTTGCTTGCCTATTATACGAGAAGTATATCGTAAACAAGCTGCCGAGGG 859 Query 58162 ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAG 58221 |||| | | || ||||| | | || || | || || ||||| | ||| | Sbjct 858 ATCGTGTGCTTGAAATTATATGCAATGCAGTATCAATTGAGCGAGAGTTCATTTGCGATG 799 Query 58222 CCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTG 58281 | |||| || | | | || ||||| | | ||||| | ||||||||||||||| Sbjct 798 CATTACCTGTCCGCTTAATTGGAATGAATTCTCAGCTGATGACTCAGTACATTGAGTTTG 739 Query 58282 TTGCCGACAGACTTTTGCTCGAACTGATTGGA-GAGCGTCATTACAACACGAAAAATCCG 58340 | ||||| | || || | | || | | || |||||||||||| |||| || || Sbjct 738 TCGCCGATCGGCTCCTGGT-GTCCTTGGGGTACGACCGTCATTACAACTCGAAGAACCCA 680 Query 58341 TTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTT 58400 ||||| || ||| || |||| || || |||| || || ||||||||||| || || ||| Sbjct 679 TTTGACTTCATGGATATGATTTCTCTTCAGGGGAAAACTAACTTTTTCGAGAAGAAGGTT 620 Query 58401 AGCGAATATCAAAAATACGGCGTGATGAG 58429 | || ||||| || || |||||||| Sbjct 619 GGTGAGTATCAGAAGGCTGGTGTGATGAG 591 >seq1878 Length=84023 Score = 176 bits (194), Expect = 4e-39 Identities = 563/867 (65%), Gaps = 10/867 (1%) Strand=Plus/Plus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||| || ||||| || |||||||||||||||||||| | || |||||||| |||||||| Sbjct 21418 GGCAATAGAGGCTAGGTTGCATACGGCCACCTCGTCCCTCGAAGTGTACTCGACAATTTC 21477 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 || || | ||| || || |||||||| | ||| |||| || || ||| || Sbjct 21478 CGTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTGATTAGACTTGAAATTACA 21537 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 | ||||||||| ||||| | || ||||| || ||||| ||||| | ||| Sbjct 21538 TGCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCACCTGAGACTCAAGGATAAGGAA 21597 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 ||||| ||| || |||| | || ||| | ||||| || || | || Sbjct 21598 CCACAGTTCCTGGGCCTGAATAGTTCTTACGCCACGACCTTCCCTTTCATATCGCTCATA 21657 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 || | ||| || || |||||||| || ||| | | || ||| Sbjct 21658 TAAATCAGTAAACTCTTGGCCATAACAGTCACTCAAAAAGGGGGCCGTGTTGGGGTCCAT 21717 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 || |||| | | | | ||||| ||| |||||| || || || ||||| ||| | Sbjct 21718 AAGCGTCCAAGTCCCATGACTCTCAACTCGTTCCATAAACAGGTCAGGAATCCACAGACC 21777 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 ||| |||| || || || ||| ||||| ||||| || || || |||| | | || Sbjct 21778 GTAAAACAAGTCCCGCGCACGCTGATCCTCCTTGCCCGTATTTTTCTTCAGAAGGAGGAA 21837 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 | || | ||||| ||||| ||||| | |||| ||||| |||||| | ||| Sbjct 21838 ACCAAAGATATCCGCGTGCCAGGGCTCCAAATAAATAGCAAAGGCGCCCTTGCGCTTGCC 21897 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 |||||||| || || || || || ||||| || |||| | ||||| || || ||||| Sbjct 21898 ACCGCCCTGGTCAACATAGCGAGCAGTGTTATTCCACACACGAAGCATGGGGACCAGACC 21957 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 || |||| || | || || | ||| || ||| |||| |||||| | Sbjct 21958 ATTCGACGTACCATTTGTCCCGGCGATGTAGCTC---CCCGCTGCGCGAATGTTGTGCAT 22014 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||||| || || || || | ||||| || ||||| || ||||| || |||||||| Sbjct 22015 GTGGATCCCGATCCCACCAGCTGATTTGCTGATGATCGCACACTGTTTGAGTGTGTCGTA 22074 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA-CACGAAGACATTTGCGCTT 23735 |||||| || || ||||| || | || | ||||||| || ||| |||||| | Sbjct 22075 GATGCCATCAATACTGTCTTCACGCATAGCTA-CAAGAAAGCATGAACTCATTTGTGGGA 22133 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-T 23794 || || | || ||| | || || | ||||| ||||| | || | |||||| | Sbjct 22134 ATGGGGTCCCCGCATTGAATAACGTTGGAGTAGCGTGGGTAAAAAACCCTTGCGACATGT 22193 Query 23795 AGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGC 23854 || | || || || | | || | ||||||||| || ||||||| ||| || ||| Sbjct 22194 AG-TCATATGTCTCCTTCACACGTTCCAAGTCCTCTCCATGGATACCGAGGGCAACACGC 22252 Query 23855 ATCATCATGTATTGAGGTCTCTCGACC 23881 | | ||| | ||| || | ||| ||| Sbjct 22253 AGGAACATCTGTTGTGGACGCTCCACC 22279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755110965920