Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq67 116 7e-21 >seq67 Length=60658 Score = 116 bits (128), Expect = 7e-21 Identities = 430/669 (64%), Gaps = 6/669 (1%) Strand=Plus/Plus Query 35177 TCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACT 35236 ||| | ||||| |||| ||| | |||||||| || || | | ||| | || || Sbjct 40470 TCCCTCTTTGGGGCCCAGATGCGTTTCTCTCTCCGCAACAATCGCCTGCCATTACTAACC 40529 Query 35237 ACCAAGAAAATTTTCTGGAGAGGAGT-TGTGGAAGAACTCTCGTGGTTCATCAGGGGCAA 35295 || ||| | || ||| | ||||| |||| |||| || | |||||| | |||| | Sbjct 40530 ACGAAGCGTGTCTTTTGGCGTGGAGTATGTG-AAGAGCTGTTGTGGTTTCTTCGGGGAGA 40588 Query 35296 TACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCG 35355 ||| | || || || | | ||| ||| ||||| ||| | | ||||| || || Sbjct 40589 AACAAATGCAAAGTTGCTGAGCGACAAGGGGATTCACATATGGGATGGGAATGGCTCACG 40648 Query 35356 GGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATA 35415 | ||| | |||||| | || || ||| | ||| || | ||||| || || Sbjct 40649 AGCATTCCTTGACAGTCGTGGCTTGACTGATTATGATGAGATGGACCTCGGACCTGTTTA 40708 Query 35416 CGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACTGG 35475 || ||||| ||| | ||||||||||| || ||| | | || |||| || Sbjct 40709 TGGCTTCCAGTGGAGGCATTTTGGTGCCGACTATATTTCTTGCAAGGAGGATTCCGAGGG 40768 Query 35476 AAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAG 35535 || ||| ||||||| | || || || | ||| | ||| ||| || || ||||| | Sbjct 40769 GAAAGGTGTTGATCAGATTGCAAACATTGTGAAGTCATTGATAGAGAACCCGGATGACCG 40828 Query 35536 AAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATG 35595 | |||||| || || |||||||| | | | | ||||| || || ||||| Sbjct 40829 TCGCATGATTTGTACAGCTTGGAATCCGGCCGCCTTGCCACGCATGGCGCTCCCACCATG 40888 Query 35596 CCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCG 35655 |||||||| || ||||| || ||| ||||| ||| | || ||| |||||| ||||| Sbjct 40889 CCACATGATGGCGCAATTCTACGTGAGCAATGGGGAACTCTCATGCATGTTGTACCAGCG 40948 Query 35656 AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCA 35715 | ||| | || | ||||| |||||||||||||| || || | || || || Sbjct 40949 GTCATGTGATATGGGTCTTGGCGTCCCCTTCAATATTGCTTCGTATGCACTGCTTACATT 41008 Query 35716 TCTGATGGCCAGTATGGT--GGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGAC 35773 || ||||| | | | | || || ||||| || || | | ||| ||||| || Sbjct 41009 CCTCATGGCAA--AAGCTTCTGGACTTCGGCCGGGCGAATTGGTGCACACCCTTGGCGAT 41066 Query 35774 GCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCAGTTGTGCCGCGTCCCTAGA 35833 ||||| |||| | || ||| | ||| || |||||| ||| ||||| || | Sbjct 41067 GCACATGTTTACAGTAACCATGTGGAGCCGTGTCGGAAGCAATTGAAACGCGTGCCCCGC 41126 Query 35834 CCATTCCCT 35842 || |||||| Sbjct 41127 CCGTTCCCT 41135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989558312254830