Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq763 145 1e-29 seq1878 96.9 4e-15 >seq763 Length=1889 Score = 145 bits (160), Expect = 1e-29 Identities = 385/572 (67%), Gaps = 16/572 (3%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 |||||||||||| || | ||| | ||||| || ||||| |||||||| | ||| Sbjct 914 GTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCAAGCC 973 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || | |||||| |||| ||| || || || || || || ||||| || || Sbjct 974 ACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAATATGCCTTCGACAGC 1033 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--ATCCACTTTTGAGCC 33773 ||||| || | || | | | ||| ||| | || ||||| | ||| Sbjct 1034 CGCAAACGCGACGAGCCGCG-TAGGGAACGAAGTCTGAC-TGCCAATCCATTCAATCGCC 1091 Query 33774 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-tt 33832 || | |||||| || | | ||| || ||||| |||||||| | || | ||| || Sbjct 1092 CATTTGGCCTTTTTCTCAATACACGGAATCGTCCTTATGGCATGTAGCAG-TCGTTGCTT 1150 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAA--GACTATACATTTCCGAATGAATG 33890 ||| | ||| |||||| ||||||||||| | || ||| | || ||||| || Sbjct 1151 TTCGTCGGGATCCACAACATACGTATCGATCAACACGGAGTAT--GTCTCAGAATGGATA 1208 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950 ||||| || || ||||| || || |||||||||| | | || | | ||||||||| | | Sbjct 1209 TTTTCCATAGCAATCTGGAACCCATAGAAACATCGAACTTCAGGTACCTGCACTTC-GCA 1267 Query 33951 CA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAA 34009 || || ||||| || | || || ||| || ||||| || || || || || ||||| Sbjct 1268 CATGAACCGTTCCGCAAGGTTCTCCAGCACAATGCCATCGCTTGCCGCGAAGAAAGCCAA 1327 Query 34010 TACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATATCTT 34068 |||||||| || || | | ||| | | || || || | |||||| | || || | Sbjct 1328 CACATGTTTGATGAAGTGTCGCTCGCCGTCGT-CCAGCTTCTCCCAATCTGTCATGTCAT 1386 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGC-CTCTGCCTTTTTATACATATTC 34127 | | || | ||| ||||| |||| | ||| ||| ||| |||| || ||| | | | Sbjct 1387 TCCCAAGGTCGATTTCCTCCACCGTCC-AGATGCTGCTCTCCGCCTCCTTGTACTTCTGC 1445 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAAC 34159 || |||||| | || | ||| ||||| ||||| Sbjct 1446 CATATGTCAGGGTACTTGATAGGGAAGATAAC 1477 >seq1878 Length=84023 Score = 96.9 bits (106), Expect = 4e-15 Identities = 284/435 (65%), Gaps = 2/435 (0%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||||| |||||| || ||||||||||| ||| | ||| | || | | | || Sbjct 21743 ACTCGTTCCATAAACAGGTCAGGAATCCACAGACCGTAAAACAAGTCCCGCGCACGCTGA 21802 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| || || ||||| || || ||| |||||| | | ||||| | ||||| || Sbjct 21803 TCCTCCTTGCCCGTATTTTTCTTCAGAAGGAGGAAACCAAAGATATCCGCGTGCCAGGGC 21862 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 ||||| || || || | | || || ||| || ||||| || | || | ||| Sbjct 21863 TCCAAATAAATAGCAAAGGCGCCCTTGCGCTTGCCACCGCCCTGGTCAACATAGCGAGCA 21922 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 |||||||| | || | | ||| || | | ||| || || ||||||| || |||| | Sbjct 21923 GTGTTATTCCACACACGAAGCATGGGGACCAGACCATTCGACGTACCATTTGTCCCGGCG 21982 Query 63507 ATATAGC-CTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63565 || |||| | || || || ||||| || || | || || || || || ||| Sbjct 21983 ATGTAGCTCCCCGCT-GCGCGAATGTTGTGCATGTGGATCCCGATCCCACCAGCTGATTT 22041 Query 63566 AGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT 63625 ||| | || || |||| | ||||| |||||||| || || || || || ||| Sbjct 22042 GCTGATGATCGCACACTGTTTGAGTGTGTCGTAGATGCCATCAATACTGTCTTCACGCAT 22101 Query 63626 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGG 63685 | ||||| || | |||||| | | || |||||||| ||||| || || Sbjct 22102 AGCTACAAGAAAGCATGAACTCATTTGTGGGAATGGGGTCCCCGCATTGAATAACGTTGG 22161 Query 63686 AGAAGCGTGCGTAAA 63700 || |||||| ||||| Sbjct 22162 AGTAGCGTGGGTAAA 22176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629801649869280