Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1878 114 2e-20 >seq1878 Length=84023 Score = 114 bits (126), Expect = 2e-20 Identities = 289/436 (66%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||||| |||||| || ||||||||||| ||| | ||| || || | | | || Sbjct 21743 ACTCGTTCCATAAACAGGTCAGGAATCCACAGACCGTAAAACAAGTCCCGCGCACGCTGA 21802 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 ||||| || || ||||| || || ||| |||||| | | ||||| ||||| || Sbjct 21803 TCCTCCTTGCCCGTATTTTTCTTCAGAAGGAGGAAACCAAAGATATCCGCGTGCCAGGGC 21862 Query 66180 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 66239 ||||| || || || | | || || ||| || ||||| || | || | ||| Sbjct 21863 TCCAAATAAATAGCAAAGGCGCCCTTGCGCTTGCCACCGCCCTGGTCAACATAGCGAGCA 21922 Query 66240 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 66299 |||||||| | || | | ||| || | | |||||| || |||||||| ||||||| | Sbjct 21923 GTGTTATTCCACACACGAAGCATGGGGACCAGACCATTCGACGTACCATTTGTCCCGGCG 21982 Query 66300 ATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 66359 || ||||| || ||| ||||| || || | || || || || || ||| Sbjct 21983 ATGTAGCTCCCCGCTGCGCGAATGTTGTGCATGTGGATCCCGATCCCACCAGCTGATTTG 22042 Query 66360 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 66419 ||| | || || |||| | || || |||||||| || ||||| || || ||| Sbjct 22043 CTGATGATCGCACACTGTTTGAGTGTGTCGTAGATGCCATCAATACTGTCTTCACGCATA 22102 Query 66420 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACT--AGTTCCCGCATTAAATAAGGTAG 66477 | ||||| || | ||||| ||| || | || |||||||| ||||| || | Sbjct 22103 GCTACAAGAAAGCATGAACTCATTT-GTG-GGAATGGGGTCCCCGCATTGAATAACGTTG 22160 Query 66478 GAGAAGCGTGCGTAAA 66493 ||| |||||| ||||| Sbjct 22161 GAGTAGCGTGGGTAAA 22176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156131773840