Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq763 163 4e-35 seq1878 114 2e-20 >seq763 Length=1889 Score = 163 bits (180), Expect = 4e-35 Identities = 389/572 (68%), Gaps = 16/572 (3%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 |||||||||||| || | ||| || |||||| || ||||| |||||||| | ||| Sbjct 914 GTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCAAGCC 973 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 |||||| || | |||||| |||| |||| || || ||||| || || || ||||| || | Sbjct 974 ACGCTTCTTTAACCAAAAAATGG-CGCAGAACGAGCCAGAGAAAAATATGCCTTCGACAG 1032 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT--ATCCACTTTTGAGC 50150 | ||||| || || || | | | ||| ||| | || ||||| | || Sbjct 1033 CCGCAAACGCGACGAGCCGCG-TAGGGAACGAAGTCTGAC-TGCCAATCCATTCAATCGC 1090 Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-t 50209 ||| | |||||| || | | ||| || ||||| |||||||| | || | ||| | Sbjct 1091 CCATTTGGCCTTTTTCTCAATACACGGAATCGTCCTTATGGCATGTAGCAG-TCGTTGCT 1149 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAA--GACTATACATTTCCGAATGAAT 50267 |||| | ||| |||||| ||||||||||| | || ||| | || ||||| || Sbjct 1150 TTTCGTCGGGATCCACAACATACGTATCGATCAACACGGAGTAT--GTCTCAGAATGGAT 1207 Query 50268 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 50327 ||||| || || ||||| || || |||||||||| | | || | | ||||||||| | Sbjct 1208 ATTTTCCATAGCAATCTGGAACCCATAGAAACATCGAACTTCAGGTACCTGCACTTC-GC 1266 Query 50328 ACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 ||| || ||||| || | || || ||| || || || || || || || || |||| Sbjct 1267 ACATGAACCGTTCCGCAAGGTTCTCCAGCACAATGCCATCGCTTGCCGCGAAGAAAGCCA 1326 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTT 50446 | |||||||| || || ||| ||| | || || | |||||| | || || | Sbjct 1327 ACACATGTTTGATGAAGTGTCGCTCGCCGTCGTCCAGCTTCTCCCAATCTGTCATGTCAT 1386 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGC-CTCTGCCTTTTTATACATATTC 50505 | | || | ||| ||||| |||| | ||| ||| ||| |||| || ||| | | | Sbjct 1387 TCCCAAGGTCGATTTCCTCCACCGTCC-AGATGCTGCTCTCCGCCTCCTTGTACTTCTGC 1445 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAAC 50537 || |||||| | || | ||| ||||| ||||| Sbjct 1446 CATATGTCAGGGTACTTGATAGGGAAGATAAC 1477 >seq1878 Length=84023 Score = 114 bits (126), Expect = 2e-20 Identities = 289/436 (66%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||| |||||| || ||||||||||| ||| | ||| | || | | | || Sbjct 21743 ACTCGTTCCATAAACAGGTCAGGAATCCACAGACCGTAAAACAAGTCCCGCGCACGCTGA 21802 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || ||||| || || ||| |||||| | | ||||| | ||||| || Sbjct 21803 TCCTCCTTGCCCGTATTTTTCTTCAGAAGGAGGAAACCAAAGATATCCGCGTGCCAGGGC 21862 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 ||||| || || || | | ||| || ||| || ||||| || | || | ||| Sbjct 21863 TCCAAATAAATAGCAAAGGCGCCCTTGCGCTTGCCACCGCCCTGGTCAACATAGCGAGCA 21922 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178 |||||||| | || | | ||| || | | |||||| || |||||||| ||||||| | Sbjct 21923 GTGTTATTCCACACACGAAGCATGGGGACCAGACCATTCGACGTACCATTTGTCCCGGCG 21982 Query 80179 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 80238 || ||||| || || ||||| || || | || || || || || ||| Sbjct 21983 ATGTAGCTCCCCGCTGCGCGAATGTTGTGCATGTGGATCCCGATCCCACCAGCTGATTTG 22042 Query 80239 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATG 80298 ||| | || || |||| | || || |||||||| || || || || ||| ||| Sbjct 22043 CTGATGATCGCACACTGTTTGAGTGTGTCGTAGATGCCATCAATACTGTCTTCACGCATA 22102 Query 80299 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACT--AGTTCCCGCATTAAATAAGGTAG 80356 | ||||| || | ||||| ||| || | || |||||||| ||||| || | Sbjct 22103 GCTACAAGAAAGCATGAACTCATTT-GTG-GGAATGGGGTCCCCGCATTGAATAACGTTG 22160 Query 80357 GAGAAGCGTGCGTAAA 80372 ||| |||||| ||||| Sbjct 22161 GAGTAGCGTGGGTAAA 22176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718250609842640