Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq763 147 3e-30 seq1878 114 2e-20 >seq763 Length=1889 Score = 147 bits (162), Expect = 3e-30 Identities = 389/575 (68%), Gaps = 22/575 (4%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||||||||||||| | ||| | |||||| || ||||| |||||||| | ||| Sbjct 914 GTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCAAGCC 973 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 |||||| || | |||||| || | |||| || || ||||| || || || ||||| || | Sbjct 974 ACGCTTCTTTAACCAAAAAATGG-CGCAGAACGAGCCAGAGAAAAATATGCCTTCGACAG 1032 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGC--ACTGTCATGTATCCACTTTTGA 42253 ||||||| || | || | | | ||| | | |||| || ||||| | Sbjct 1033 CCGCAAACGCGACGAGCCGCG-TAGGGAACGAAGTCTGACTGCCA---ATCCATTCAATC 1088 Query 42254 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 42313 ||||| | |||||| || | | ||| || ||||| |||||||| | || | ||| Sbjct 1089 GCCCATTTGGCCTTTTTCTCAATACACGGAATCGTCCTTATGGCATGTAGCAG-TCGTTG 1147 Query 42314 -ttttCATTACTATCTTTAACATATGTATCGATCAAAA--GACTATACATTTCTGAATGA 42370 ||||| | ||| |||||| ||||||||||| | || ||| | || ||||| Sbjct 1148 CTTTTCGTCGGGATCCACAACATACGTATCGATCAACACGGAGTAT--GTCTCAGAATGG 1205 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| || || ||||| || || |||||||||| | || | ||||| ||||| Sbjct 1206 ATATTTTCCATAGCAATCTGGAACCCATAGAAACATCGAACTTCAGGTACCTGCACTTC- 1264 Query 42431 GTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | ||| || ||||| || | || || ||| || || || || || || || || || Sbjct 1265 GCACATGAACCGTTCCGCAAGGTTCTCCAGCACAATGCCATCGCTTGCCGCGAAGAAAGC 1324 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGT-TAATTTATTCCAATCATTGATAT 42548 ||| |||||||| || || | | ||| ||| || | || | |||||| | || | Sbjct 1325 CAACACATGTTTGATGAAGTGTCGCTCG-CCGTCGTCCAGCTTCTCCCAATCTGTCATGT 1383 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT-TCTGCCTTTTTATACATA 42607 | || | || | ||| || ||||||| | ||| |||| || |||| || ||| | Sbjct 1384 CATTCCCAAGGTCGATTTCCTCCACCGTCC-AGATGCTGCTCTCCGCCTCCTTGTACTTC 1442 Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATAAC 42642 | ||| || ||| | || | || ||||| ||||| Sbjct 1443 TGCCATATGTCAGGGTACTTGATAGGGAAGATAAC 1477 >seq1878 Length=84023 Score = 114 bits (126), Expect = 2e-20 Identities = 289/436 (66%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||| |||||| || ||||||||||| ||| | ||| | || | | | || Sbjct 21743 ACTCGTTCCATAAACAGGTCAGGAATCCACAGACCGTAAAACAAGTCCCGCGCACGCTGA 21802 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || ||||| || || ||| |||||| | | ||||| | ||||| || Sbjct 21803 TCCTCCTTGCCCGTATTTTTCTTCAGAAGGAGGAAACCAAAGATATCCGCGTGCCAGGGC 21862 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 ||||| || || || | | ||| || ||| || ||||| || | || | ||| Sbjct 21863 TCCAAATAAATAGCAAAGGCGCCCTTGCGCTTGCCACCGCCCTGGTCAACATAGCGAGCA 21922 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 |||||||| | || | | ||| || | | |||||| || | |||||| ||||||| | Sbjct 21923 GTGTTATTCCACACACGAAGCATGGGGACCAGACCATTCGACGTACCATTTGTCCCGGCG 21982 Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321 || ||||| || || ||||| ||| || | || || || || || ||| Sbjct 21983 ATGTAGCTCCCCGCTGCGCGAATGTTGTGCATGTGGATCCCGATCCCACCAGCTGATTTG 22042 Query 72322 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 72381 ||| | || || |||| | || || |||||||| || ||||| || || ||| Sbjct 22043 CTGATGATCGCACACTGTTTGAGTGTGTCGTAGATGCCATCAATACTGTCTTCACGCATA 22102 Query 72382 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACT--AGTTCCCGCATTAAATAAGGTAG 72439 | ||||| || | ||||| ||| || | || |||||||| ||||| || | Sbjct 22103 GCTACAAGAAAGCATGAACTCATTT-GTG-GGAATGGGGTCCCCGCATTGAATAACGTTG 22160 Query 72440 GAGAAGCGTGCGTAAA 72455 ||| |||||| ||||| Sbjct 22161 GAGTAGCGTGGGTAAA 22176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122203399760