Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1149 102 7e-17 >seq1149 Length=36903 Score = 102 bits (112), Expect = 7e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || ||||| |||||| ||||||||||| || | ||| || || | ||||||| ||| Sbjct 9626 TGCAGTGTCGACTCCTTCTGAATGTTGTAGTCCG-CAAGCGTGCGACCCTCCTCCAACTG 9684 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | |||| || |||||||||||| || | || ||||||||| ||| || Sbjct 9685 CTTCCCGGCAAAAATCAACCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTT 9744 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| ||| | | ||| ||| | | |||||||| || || Sbjct 9745 GGCCTTTACGTTCTCAATGGTGTCGCTGGCCTCAACCTCAAGAGCAATGGTTTTGCCAGT 9804 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| |||||||| || |||||||| ||| Sbjct 9805 GAGGGTTTTCACGAAGATCTGCATGGTG 9832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421240798518026