Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1149 105 6e-18 >seq1149 Length=36903 Score = 105 bits (116), Expect = 6e-18 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 |||| ||||| || || ||||| || | ||| || || | || || || || |||| Sbjct 9620 ACCAGGTGCAGTGTCGACTCCTTCTGAATGTTGTAGTC-CGCA-AGCGTGCGACCCTCCT 9677 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||| || ||| |||| || || | |||||||| ||||| ||||| || ||||| | Sbjct 9678 CCAACTGCTTCCCGGCAAAAATCAACCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCT 9737 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGT 94974 ||| || ||||| ||| | | ||||| || ||| || || |||| | ||||| Sbjct 9738 GAATCTTGGCCTTTACGTTCTCAATGGTGTC-GC-TGGCCTCAACCTCAAGAGCAATGGT 9795 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| ||||| || |||||||| |||||||||||| Sbjct 9796 TTTGCCAGTGAGGGTTTTCACGAAGATCTGCATG 9829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448279847025360