Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq763 149 8e-31 seq1878 91.5 2e-13 >seq763 Length=1889 Score = 149 bits (164), Expect = 8e-31 Identities = 386/572 (67%), Gaps = 16/572 (3%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 |||||||||||| || | ||| || |||||| || ||||| |||||||| | ||| Sbjct 914 GTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCAAGCC 973 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| || | |||||| |||| ||| || ||||| || || || ||||| || || Sbjct 974 ACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAATATGCCTTCGACAGC 1033 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--ATCCACTTTTGAGCC 33495 ||||| || | || | | | ||| ||| | || ||||| | ||| Sbjct 1034 CGCAAACGCGACGAGCCGCG-TAGGGAACGAAGTCTGAC-TGCCAATCCATTCAATCGCC 1091 Query 33496 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-tt 33554 || | |||||| || | | ||| || ||||| |||||||| | || | ||| || Sbjct 1092 CATTTGGCCTTTTTCTCAATACACGGAATCGTCCTTATGGCATGTAGCAG-TCGTTGCTT 1150 Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAA--GACTATACATTTCCGAATGAATG 33612 ||| | ||| |||||| ||||||||||| | || ||| | || ||||| || Sbjct 1151 TTCGTCGGGATCCACAACATACGTATCGATCAACACGGAGTAT--GTCTCAGAATGGATA 1208 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 ||||| || || ||||| || || |||||||||| | | || | | ||| ||||| | | Sbjct 1209 TTTTCCATAGCAATCTGGAACCCATAGAAACATCGAACTTCAGGTACCTGCACTTC-GCA 1267 Query 33673 CA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 || || |||||||| | || || ||| || || || || || || || || ||||| Sbjct 1268 CATGAACCGTTCCGCAAGGTTCTCCAGCACAATGCCATCGCTTGCCGCGAAGAAAGCCAA 1327 Query 33732 TACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATATCTT 33790 |||||||| || || | | ||| | | || || || | |||||| | || || | Sbjct 1328 CACATGTTTGATGAAGTGTCGCTCGCCGTCGT-CCAGCTTCTCCCAATCTGTCATGTCAT 1386 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGC-CTCTGCCTTTTTATACATGTTC 33849 | | || | ||| ||||| |||| | ||| ||| ||| |||| || ||| | | | Sbjct 1387 TCCCAAGGTCGATTTCCTCCACCGTCC-AGATGCTGCTCTCCGCCTCCTTGTACTTCTGC 1445 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAAC 33881 || |||||| || | ||| ||||| ||||| Sbjct 1446 CATATGTCAGGGTACTTGATAGGGAAGATAAC 1477 >seq1878 Length=84023 Score = 91.5 bits (100), Expect = 2e-13 Identities = 284/436 (65%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||||| |||||| || ||||||||||| ||| | ||| | || | | | || Sbjct 21743 ACTCGTTCCATAAACAGGTCAGGAATCCACAGACCGTAAAACAAGTCCCGCGCACGCTGA 21802 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 ||||| || || ||||| || || ||| |||||| | | ||||| | ||||| || Sbjct 21803 TCCTCCTTGCCCGTATTTTTCTTCAGAAGGAGGAAACCAAAGATATCCGCGTGCCAGGGC 21862 Query 63336 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63395 ||||| || || || | | || || ||| || ||||| || | || | ||| Sbjct 21863 TCCAAATAAATAGCAAAGGCGCCCTTGCGCTTGCCACCGCCCTGGTCAACATAGCGAGCA 21922 Query 63396 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63455 |||||||| | || | | ||| || | | ||| || || ||||||| || |||| | Sbjct 21923 GTGTTATTCCACACACGAAGCATGGGGACCAGACCATTCGACGTACCATTTGTCCCGGCG 21982 Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63515 || ||||| || || ||||| || || | || || || || || ||| Sbjct 21983 ATGTAGCTCCCCGCTGCGCGAATGTTGTGCATGTGGATCCCGATCCCACCAGCTGATTTG 22042 Query 63516 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575 ||| | || || |||| | ||||| ||||| || || || || || || ||| Sbjct 22043 CTGATGATCGCACACTGTTTGAGTGTGTCGTAGATGCCATCAATACTGTCTTCACGCATA 22102 Query 63576 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACT--AGTTCCCGCATTAAATAAGGTAG 63633 | ||||| || | ||||| ||| || | || |||||||| ||||| || | Sbjct 22103 GCTACAAGAAAGCATGAACTCATTT-GTG-GGAATGGGGTCCCCGCATTGAATAACGTTG 22160 Query 63634 GAGAAGCGTGCGTAAA 63649 ||| |||||| ||||| Sbjct 22161 GAGTAGCGTGGGTAAA 22176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931423862160