Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1878 159 9e-34 seq763 129 2e-24 >seq1878 Length=84023 Score = 159 bits (176), Expect = 9e-34 Identities = 594/914 (65%), Gaps = 34/914 (4%) Strand=Plus/Minus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 || || || || || || ||||| |||||||||| | ||||||||| | ||| | Sbjct 22278 GTGGAGCGTCCACAACAGATGTTCCTGCGTGTTGCCCTCGGTATCCATGGAGAGGACTTG 22219 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTATTC-ACGCACGCCACGC 363562 || | || || |||||| | || | | || || | || || || ||||| || | Sbjct 22218 GAACGTGTGAAGGAGACATATGA-CTAC-ATGTCGCAAGGGTTTTTTACCCACGCTACTC 22161 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 |||| | | |||||| || || | ||||| ||| ||| ||||||||| || | Sbjct 22160 CAACGTTATTCAATGCGGGGACCCCATTCCCACAAATGAGTTCATGCTTTCTTGTAGCTA 22101 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 || || || || || || |||| |||||||| || | ||||| | || || Sbjct 22100 TGCGTGAAGACAGTATTGATGGCATCTACGACACACTCAAACAGTGTGCGATCATCAGCA 22041 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTC 363742 | || || || || || | || ||||| |||| ||| | || ||||| Sbjct 22040 AATCAGCTGGTGGGATCGGGATCCACATGCACAACATTCGCGCAGCGGGGAGCTACATCG 21981 Query 363743 GCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 ||| ||| || ||| |||||||| ||||| |||||||||||||||| | || ||| Sbjct 21980 CCGGGACAAATGG-TACGTCGAATGGTCTGGTCCCCATGCTTCGTGTGTGGAATAACACT 21922 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || | || || |||||||| || || |||||||| || || |||||||| ||| | ||| Sbjct 21921 GCTCGCTATGTTGACCAGGGCGGTGGCAAGCGCAAGGGCGCCTTTGCTATTTATTTGGAG 21862 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 || || || ||||| |||| || || || |||||| ||||| || ||||| Sbjct 21861 CCCTGGCACGCGGATATCTTTGGTTTCCTCCTTCTGAAGAAAAATACGGGCAAGGAGGAT 21802 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 |||||| || || |||| || | || ||| || |||||| |||||| | || || Sbjct 21801 CAGCGTGCGCGGGACTTGTTTTACGGTCTGTGGATTCCTGACCTGTTTATGGAACGAGTT 21742 Query 363982 GAGGCAGGTAAGAATTGGTCACTCTTTTG----CCCACACGAATGTCCAGGTCTTTCCGA 364037 ||| | || |||| || ||| || || ||||| | || |||| || Sbjct 21741 GAGAGTCATGGGACTTGG--ACGCTTATGGACCCCAACACG---GCCC---CCTTTTTGA 21690 Query 364038 -TGTATG---GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGG 364093 || || || | || | | || | |||| || |||||| |||||| | Sbjct 21689 GTGACTGTTATGGCCAAGAGTTTACTGATTTATATGAGCGATATGAA----AGGGAAGGT 21634 Query 364094 C---TCGTAAG-ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATT 364149 | |||||| || |||| || ||| | || ||||| ||| | || || ||| | Sbjct 21633 CGTGGCGTAAGAACTATTCAGGCCCAGGAACTGTGGTTCCTTATCCTTGAGTCTCAGGTG 21574 Query 364150 GAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAG 364209 || || || || | |||| | ||||| ||| | || || |||||| || ||| | Sbjct 21573 GAAACGGGGGTTCCTTTTATGCTTTACAAGGATGCATGTAATTTCAAGTCTAATCAGAAA 21514 Query 364210 CACCTTGGTACAATTCA--GCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTC 364267 | || || || ||| | || | || | || || || ||| | || ||||| | Sbjct 21513 AATCTCGGCACGATTAAATGCTCA--AATTTGTGCACGGAAATTGTCGAGTACACTTCGA 21456 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATG 364327 |||||| |||||||| ||||| || || || || |||||| ||||| || |||| Sbjct 21455 GGGACGAGGTGGCCGTATGCAACCTAGCCTCTATTGCCCTTCCGCGTTTTGTGAAGGATG 21396 Query 364328 GTACTTTTGACCAC 364341 | | |||||| || Sbjct 21395 GCGCATTTGACTAC 21382 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 364726 GGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTC 364785 |||| || ||||| || | | ||||||||||| ||||| ||||| | |||||||| Sbjct 20958 GGTATGCGTAACTCGCTGTTAATTGCGCCCATGCCAACGGCATCTACGTCGCAGATCCTT 20899 Query 364786 GGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCC 364845 || ||||| |||||| ||||||| ||||| |||| | || |||||||| | | Sbjct 20898 GGTAACAATGAGTGCATCGAACCCTTTACTTCCAATATCTACGTGCGCCGGGTCTTAAGC 20839 Query 364846 GGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCT 364886 || || ||||| || || || || |||| || ||||| || Sbjct 20838 GGGGAGTTTCCAGTTGTAAACAAACACCTTGTAAAGGAGCT 20798 >seq763 Length=1889 Score = 129 bits (142), Expect = 2e-24 Identities = 342/520 (66%), Gaps = 2/520 (0%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAA 22491 ||| |||| ||||| | |||||| | ||||||| || | | ||| ||| | Sbjct 1111 ATTGAGAAAAAGGCCAAATGGGCGATTGAATGGATTGGCAGTCAGACTTCGTTCCCTACG 1052 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || || | || ||||| | || |||||||| || || ||||| | || || || || Sbjct 1051 CGGCTCGTCGCGTTTGCGGCTGTCGAAGGCATATTTTTCTCTGGCTCGTTCTGCGCCATT 992 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 |||||| |||| || |||| | ||||| || || || || || ||| | ||| Sbjct 991 TTTTGGTTAAAGAAGCGTGGCTTGATGCCCGGGCTCACCTTCAGCAACGAGCTGATTTCA 932 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 || ||||||||||| || || || ||||| || | |||| ||| ||||| | | Sbjct 931 CGTGATGAGGGTCTGCACACTGACTTTGCTTGCCTATTATACGAGAAGTATATCGTAAAC 872 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 || || || || ||| ||||| ||||| |||||||| | |||| || Sbjct 871 AAGCTGCCGAGGGATCGTGTGCTTGAAATTATATGCAATGCAGTATCAATTGAGCGAGAG 812 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 || |||||||| || ||||| || | | ||||| || ||| | | |||| | Sbjct 811 TTCATTTGCGATGCATTACCTGTCCGCTTAATTGGAATGAATTCTCAGCTGATGACTCAG 752 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 || ||| | ||||| || ||||| || | | || | || || | ||||| ||| Sbjct 751 TACATTGAGTTTGTCGCCGATCGGCTCCTGGTGTCCTTGGGGTACGACCGTCATTACAAC 692 Query 22852 GTCG-TTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910 ||| || |||||||| | ||||| | ||||| ||| | || || || || || || Sbjct 691 -TCGAAGAACCCATTTGACTTCATGGATATGATTTCTCTTCAGGGGAAAACTAACTTTTT 633 Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||| || | |||||||| || || || || ||||| ||| Sbjct 632 CGAGAAGAAGGTTGGTGAGTATCAGAAGGCTGGTGTGATG 593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303319767384332