Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1149 104 2e-17 seq763 87.8 2e-12 >seq1149 Length=36903 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATG-GTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||||||||||| ||||||||||| || | || | ||||| ||||| | |||||| || Sbjct 9632 GTCGACTCCTTCTGAATGTTGTAGTC-CGCAAGCGTGCGACCCTCCTCCAACTGCTTCCC 9690 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || | || || |||||||| ||||||||||| || || ||||| || || ||| Sbjct 9691 GGCAAAAATCAACCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTTGGCCTT 9750 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | || ||| ||| ||| | || | | || |||||| || || || || Sbjct 9751 TACGTTCTCAATGGTGTCGCTGGCCTCAACCTCAAGAGCAATGGTTTTGCCAGTGAGGGT 9810 Query 131217 TTTTACGAAAATCTGCATG 131235 ||| ||||| ||||||||| Sbjct 9811 TTTCACGAAGATCTGCATG 9829 >seq763 Length=1889 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 46162 GTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA-GTTTTGCCGCCATCTTTTA 46220 || || |||||| ||| || ||| | ||||| |||||| ||| ||| ||||| |||| Sbjct 1045 GTCGCGTTTGCGGCTGTCGAAGGCATATTTTTCTCTGGCTCGTTCTGC-GCCATTTTTTG 987 Query 46221 CATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGA 46280 | || | ||| | |||||||| || || || |||||||||||||| || || || Sbjct 986 GTTAAAGAAGCGTGGCTTGATGCCCGGGCTCACCTTCAGCAACGAGCTGATTTCACGTGA 927 Query 46281 CGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 ||||| ||||| || |||||||| || || Sbjct 926 TGAGGGTCTGCACACTGACTTTGCTTGCCT 897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472000846275840