Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1149 95.1 1e-14 >seq1149 Length=36903 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||||||| ||||| || |||||||| || ||||||||||| || Sbjct 9602 CCACCTCGAAGGCGGAGTACCAGGTGCAGTGTCGACTCCTTCTGAATGTTGTAGTCCGCA 9661 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||||||| || || || ||| |||| | |||||| || ||| ||| Sbjct 9662 AGCGTGCGACCCTCCTCCAACTGCTTCCCGGCAAAAATCAACCGCTGCTGATCCGGAGGG 9721 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | ||| || | | | ||||||| || ||| Sbjct 9722 ATACCCTCCTTGTCCTGAATCTTGGCCTTTACGTTCTCAATGGTGTCGCTGGCCTCAACC 9781 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | | |||||||| || || || ||||| || || |||||||| Sbjct 9782 TCAAGAGCAATGGTTTTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 9828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405077997617740