Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1392 102 2e-16 seq763 102 2e-16 >seq1392 Length=6698 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 218528 ACAAGGAGCTCATTCTTTTCTC-GCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTG 218586 |||| ||||| ||||||||||| | | | |||| |||| ||||||||||| || ||| Sbjct 6376 ACAAAGAGCTTATTCTTTTCTCTGTCGCAGATTGTG-AGCGGTCTATTCCCAGTGTTGTG 6318 Query 218587 GATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTT 218646 ||||| | || || |||||| ||||| | ||| | || || ||||| || || ||| Sbjct 6317 GATGGTTTAAAACCTGGGCAGCGGAAGATAATGTTTTCAGCGTTTAAGCGTAATCTTGTT 6258 Query 218647 CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706 | | ||||||| |||||| || ||||||| || || || ||| || || ||| Sbjct 6257 CGATCGCTTAAGGTGGCTCAGCTTGCTGGTTACGTCTCAGAGCACGCTGCATATCACCAC 6198 Query 218707 GGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGG 218759 || |||||| || ||||||| || | |||||||| || ||||| Sbjct 6197 GGCGAGCAGTCATTGGTTCAAACCATTGTTGGACTTGCACAGGATTACGTGGG 6145 >seq763 Length=1889 Score = 102 bits (112), Expect = 2e-16 Identities = 146/198 (74%), Gaps = 11/198 (6%) Strand=Plus/Plus Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCAAGAATGGTCTTGAT 252269 |||| |||||||| ||| ||||||||||| | || ||||| ||||| | || ||||| Sbjct 1281 GCAAGGTTCTCCAGCACAATGCCATCGCTTGCCGCGAAGAAAGCCAACACATGT-TTGAT 1339 Query 252270 GAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG 252329 |||||| ||||| |||||| ||||| || ||| || | ||||| | | | ||| Sbjct 1340 GAAGTGTCGCTCGCCGTCGTCCAGCTTCTC---CCAATCTGTCATGTCAT--TCCCAAGG 1394 Query 252330 A--ACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATC 252386 | ||| ||||||||||||| || | |||||| ||||||| | ||| | | || Sbjct 1395 TCGATTTCCTCCACCGTCCAGATGCTGCTCTCCGCCTCCTTGTACTTCTGC-CATATGTC 1453 Query 252387 AGGGTACTTGATTGGGAA 252404 |||||||||||| ||||| Sbjct 1454 AGGGTACTTGATAGGGAA 1471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027810119283866