Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1149 143 5e-29 seq1609 91.5 3e-13 seq430 87.8 3e-12 seq763 86.0 1e-11 >seq1149 Length=36903 Score = 143 bits (158), Expect = 5e-29 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | ||||| ||| || || ||||| || || ||||| || || | Sbjct 9602 CCACCTCGAAGGCGGAGTACCAGGTGCAGTGTCGACTCCTTCTGAATGTTGTAGTCCGCA 9661 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || |||||||||||||| || || | | || || || || || Sbjct 9662 AGCGTGCGACCCTCCTCCAACTGCTTCCCGGCAAAAATCAACCGCTGCTGATCCGGAGGG 9721 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || |||||||| |||||||| ||||| ||| ||| |||||||| ||| | || || Sbjct 9722 ATACCCTCCTTGTCCTGAATCTTGGCCTTTACGTTCTCAATGGTGTC-GCTGGCCTCAAC 9780 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTAT 68469 || | | |||||||| || |||||||| || ||||| |||||||| |||||| Sbjct 9781 CTCAAGAGCAATGGTTTTGCCAGTGAGGGTTTTCACGAAGATCTGCATGGTGCTAT 9836 >seq1609 Length=16429 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 7902 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 7845 >seq430 Length=22372 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 22362 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGCGGGTTCGAGCCCCAC 22305 >seq763 Length=1889 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682 |||||||||| ||| ||||||||||| | || ||||| | | | || ||||||||| Sbjct 1284 AGGTTCTCCAGCACAATGCCATCGCTTGCCGCGAAGAAAGCCAACACATGTTTGATGAAG 1343 Query 10683 TGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACC 10742 || ||||| | |||| ||| || || ||| ||| || || | || | || Sbjct 1344 TGTCGCTCGCCGTCGTCCAGCTTCTC---CCAATCTGTCATGTCATTCCCAAGGTCGATT 1400 Query 10743 TCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTAC 10802 |||||||| ||||||| || | |||| ||||||| |||| | ||||| |||||| Sbjct 1401 TCCTCCACCGTCCAGATGCTGCTCTCCGCCTCCTTGTACTTCTGCCATATGTCAGGGTAC 1460 Query 10803 CGGATGGGGAA 10813 ||| ||||| Sbjct 1461 TTGATAGGGAA 1471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921599059912720