Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq763 113 1e-19 >seq763 Length=1889 Score = 113 bits (124), Expect = 1e-19 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTA-TTGGCATGAACTCTGAACTCATGGG 243590 || ||||||||||| || ||| | || | ||||| |||| ||||| ||| | || ||| Sbjct 814 GAGTTCATTTGCGATGC-ATTACCTGTCCGCTTAATTGGAATGAATTCTCAGCTGATGAC 756 Query 243591 ACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTA 243650 |||||||| || || || ||||| || | | | | | || || || || Sbjct 755 TCAGTACATTGAGTTTGTCGCCGATCGGCTCCTGGTGTCCTTGGGGTACGACCGTCATTA 696 Query 243651 CAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTT 243710 |||||| |||||||| |||| ||| ||||| | ||||| ||||| |||||||||||||| Sbjct 695 CAACTCGAAGAACCCATTTGACTTCATGGATATGATTTCTCTTCAGGGGAAAACTAACTT 636 Query 243711 CTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATGA 243754 ||||| ||| || |||| ||||| |||||||||||| Sbjct 635 TTTCGAGAAGAAGGTTGGTGAGTATCAGAAGGCTGGTGTGATGA 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102851371303100