Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1878 147 3e-30 seq763 104 3e-17 seq1392 82.4 9e-11 >seq1878 Length=84023 Score = 147 bits (162), Expect = 3e-30 Identities = 368/553 (67%), Gaps = 12/553 (2%) Strand=Plus/Plus Query 114094 ctcccccTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGT 114153 |||| | | ||||| ||||||||| || | |||| || || || ||| | ||| || Sbjct 21049 CTCCTCATCCCACAGATCAAACTGCAGTTTCCCTTCCGAAGCAGGGCTTCCTTTAAACGT 21108 Query 114154 CTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 114213 || || || || || || |||||||| | || || || | ||||| || || Sbjct 21109 TTCATAGGGCCCGTCCTTTTCAGCCAATTCCGTACTTGCTTCCACAGCTGCAAAGTAAAT 21168 Query 114214 TGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA 114273 ||||| || || | ||||| ||| |||||| | | || | || || | Sbjct 21169 GGTCTCGAAGATTTGTCTATTCAACTTCTTTGCCTCGGGGTGTGCGAATGGCAG--GGAA 21226 Query 114274 CAAAAT--AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 114331 | | ||| ||||||| || || |||||||||| || | |||||||| |||| | Sbjct 21227 AGCAGTGCAAACGCATCCGCCAGTCCCTGGACACCGATACCCACAGGGCGATGCCTCAAA 21286 Query 114332 TTAGACTTTCGAGCGGTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 114390 ||| | ||| || || | ||| ||||| || | ||| || |||| || ||||| Sbjct 21287 TTACTGTATCGGGCC-TCACACACTGGATAGTGGTTGCGATCAATCACCCGGTTAAGATT 21345 Query 114391 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 114450 | |||| ||||||||||| | || | | |||| ||||| |||| | || Sbjct 21346 TCTGGTCACAACCTTTGTCACCTCCTTCAATGCAACGTAGTCAAA--TGCGC----CATC 21399 Query 114451 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 114510 || ||| | |||||||| || || || || || || || | ||| ||| | Sbjct 21400 CTTCACAAAACGCGGAAGGGCAATAGAGGCTAGGTTGCATACGGCCACCTCGTCCCTCGA 21459 Query 114511 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 114570 ||||||||| | ||||||||| ||||||||||| | ||||| ||||| | || || || Sbjct 21460 AGTGTACTCGACAATTTCCGTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTG 21519 Query 114571 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 114630 ||| ||||| ||||| ||||||||||||||||| | || |||||| ||| || Sbjct 21520 ATTAGACTTGAAATTACATGCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCACCTG 21579 Query 114631 GGACTTGAGAATA 114643 |||| || ||| Sbjct 21580 AGACTCAAGGATA 21592 >seq763 Length=1889 Score = 104 bits (114), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| |||||||| ||||| || || || || || |||| || || Sbjct 903 GCAAAGTCAGTGTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCCG 962 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | || |||||||| ||||| ||||| || || || || || ||||| || || Sbjct 963 GGCATCAAGCCACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAATATG 1022 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAAC 126226 || || ||| ||| ||||| | ||| ||| || || || | || || ||| | Sbjct 1023 CCTTCGACAGCCGCAAACGCGACGAGCCGCGTAGGGAACGAA---GTCTGACTGCCAATC 1079 Query 126227 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGG 126264 || | |||||||| | ||||||||||| |||||||| Sbjct 1080 CATTCAATCGCCCATTTGGCCTTTTTCTCAATACACGG 1117 >seq1392 Length=6698 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 172601 TGGATCATATTCAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATA 172660 || |||||||| | ||||||||||||||||||||| ||||||| |||| ||| | |||| Sbjct 434 TGAATCATATTGATGATGAGACCCTTAATGTGTGACCCATCGTGATCCTGATCAGACATA 493 Query 172661 ATCATAAGCCGACCATAGCGAAG 172683 ||||| || | ||||| || || Sbjct 494 ATCATCAGGTGCCCATACCGCAG 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597338472020080