Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1149 104 2e-17 >seq1149 Length=36903 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || || | ||||| | || || | |||||| ||| Sbjct 9632 GTCGACTCCTTCTGAATGTTGTAGTCCGCAAGCGTGCGACCCTCCTCCAACTGCTTCCCG 9691 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | ||||||||| || ||||| || || || || || || || || |||| Sbjct 9692 GCAAAAATCAACCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTTGGCCTTT 9751 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | ||| || || || | || | ||| ||||| || | ||| Sbjct 9752 ACGTTCTCAATGGTGTCGCTGGCCTCAACCTCAAGAGCAATGGTTTTGCCAGTGAGGGTT 9811 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 9812 TTCACGAAGATCTGCAT 9828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499632146495440