Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1878 123 2e-23 >seq1878 Length=84023 Score = 123 bits (136), Expect = 2e-23 Identities = 233/343 (68%), Gaps = 0/343 (0%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || || | ||||| ||||| | ||||||| |||| |||| || || || |||||| Sbjct 22080 GGCATCTACGACACACTCAAACAGTGTGCGATCATCAGCAAATCAGCTGGTGGGATCGGG 22021 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 ||| | ||| || | || || ||| ||||||| ||| || ||||| || || Sbjct 22020 ATCCACATGCACAACATTCGCGCAGCGGGGAGCTACATCGCCGGGACAAATGGTACGTCG 21961 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 || || || ||||| ||||| || || | || ||| | || ||||| || |||||||| Sbjct 21960 AATGGTCTGGTCCCCATGCTTCGTGTGTGGAATAACACTGCTCGCTATGTTGACCAGGGC 21901 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 ||||| | | | ||||| | || || | ||| | ||||||||||||||||| | Sbjct 21900 GGTGGCAAGCGCAAGGGCGCCTTTGCTATTTATTTGGAGCCCTGGCACGCGGATATCTTT 21841 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | |||| || ||| || || ||||| || || | || | ||| | || Sbjct 21840 GGTTTCCTCCTTCTGAAGAAAAATACGGGCAAGGAGGATCAGCGTGCGCGGGACTTGTTT 21781 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGA 94321 |||| ||| ||| | || ||||| |||||| |||| || |||| Sbjct 21780 TACGGTCTGTGGATTCCTGACCTGTTTATGGAACGAGTTGAGA 21738 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| ||||| | | || |||||||| ||||| || ||| ||||||||||||| ||||| Sbjct 20949 AACTCGCTGTTAATTGCGCCCATGCCAACGGCATCTACGTCGCAGATCCTTGGTAACAAT 20890 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| |||||||||| || ||||| | ||| | ||||| | |||||| || Sbjct 20889 GAGTGCATCGAACCCTTTACTTCCAATATCTACGTGCGCCGGGTCTTAAGCGGGGAGTTT 20830 Query 95209 CCCGTCATCAACAAGCACCT 95228 || || | ||||| ||||| Sbjct 20829 CCAGTTGTAAACAAACACCT 20810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494710671134960